Gene detail information of Glyur000161s00011244 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G26560.1 | 4.00E-89 | phospholipase A 2A |
| NR | KHN04516.1 | 5.35E-169 | Patatin group A-3 [Glycine soja] |
| COG | YP_678618.1 | 1.00E-20 | patatin-like protein [Cytophaga hutchinsonii ATCC 33406] |
| Swissprot | tr|O48723|PLP2_ARATH | 3.00E-108 | Patatin-like protein 2 |
| trEMBL | tr|G7J6A8|G7J6A8_MEDTR | 1.00E-168 | Patatin {ECO:0000256|RuleBase:RU361262} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00161 | 25133 | 26908 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.438 |
| SRR1783600 | control | 0.425 |
| SRR1783602 | moderate drought stress | 0.477 |
| SRR1811619 | moderate drought stress | 0.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.474 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.401 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.210 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.173 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.321 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.046 |
| SRR2868004 | Drought Stress (root) | 0.136 |
| SRR2967015 | Control (root) | 0.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.076 |
| SRR9715740 | Leaf | 0.748 |
| SRR9715741 | Leaf | 7.986 |
| SRR9715739 | Root | 0.626 |
| SRR9715742 | Root | 2.819 |
| SRR9715743 | Root | 2.815 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.052 |
| SRR8749028 | MeJA induced 9h | 0.157 |
| SRR8749029 | MeJA induced 9h | 0.046 |
| SRR8749030 | Uninduced | 12.207 |
| SRR8749031 | Uninduced | 7.583 |
| SRR8749032 | Uninduced | 4.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.465 |
| SRR8400027 | Control - Root | 1.252 |