Gene detail information of Glyur000160s00019173 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40370.1 | 0 | laccase 5 |
| NR | XP_007163585.1 | 0 | hypothetical protein PHAVU_001G246700g [Phaseolus vulgaris] |
| COG | YP_001098875.1 | 6.00E-22 | copper resistance protein A [Herminiimonas arsenicoxydans] |
| Swissprot | tr|Q9SIY8|LAC5_ARATH | 0 | Laccase-5 (Precursor) |
| trEMBL | tr|I1MYY9|I1MYY9_SOYBN | 0 | Laccase {ECO:0000256|RuleBase:RU361119} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00160 | 246310 | 250916 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000160s00019173.1 | PF07732.10 | Cu-oxidase_3 | 37 | 148 | 1.20E-44 |
| Glyur000160s00019173.1 | PF00394.17 | Cu-oxidase | 171 | 255 | 1.10E-24 |
| Glyur000160s00019173.1 | PF07731.9 | Cu-oxidase_2 | 367 | 499 | 8.10E-40 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.323 |
| SRR1783600 | control | 0.316 |
| SRR1783602 | moderate drought stress | 0.353 |
| SRR1811619 | moderate drought stress | 0.351 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.321 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.336 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.961 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.787 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.098 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.279 |
| SRR2868004 | Drought Stress (root) | 2.208 |
| SRR2967015 | Control (root) | 6.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.404 |
| SRR9715740 | Leaf | 0.118 |
| SRR9715741 | Leaf | 1.743 |
| SRR9715739 | Root | 0.469 |
| SRR9715742 | Root | 1.202 |
| SRR9715743 | Root | 0.786 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 1.328 |
| SRR8749031 | Uninduced | 1.571 |
| SRR8749032 | Uninduced | 0.313 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.163 |
| SRR8400027 | Control - Root | 2.025 |