Gene detail information of Glyur000160s00019156 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G40320.1 | 3.00E-149 | TRICHOME BIREFRINGENCE-LIKE 33 |
| NR | XP_003552833.2 | 0 | PREDICTED: protein YLS7-like [Glycine max] |
| Swissprot | tr|F4IH21|TBL33_ARATH | 0 | Protein trichome birefringence-like 33 |
| trEMBL | tr|K7MPH2|K7MPH2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G02741.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00160 | 116975 | 121389 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000160s00019156.1 | PF14416.1 | PMR5N | 101 | 144 | 3.00E-15 |
| Glyur000160s00019156.1 | PF13839.1 | PC-Esterase | 143 | 414 | 3.50E-68 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.324 |
| SRR1783600 | control | 8.941 |
| SRR1783602 | moderate drought stress | 5.230 |
| SRR1811619 | moderate drought stress | 5.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.553 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.340 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.886 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.541 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.987 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.775 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.561 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.099 |
| SRR2868004 | Drought Stress (root) | 20.637 |
| SRR2967015 | Control (root) | 17.459 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.162 |
| SRR9715740 | Leaf | 0.762 |
| SRR9715741 | Leaf | 0.977 |
| SRR9715739 | Root | 2.034 |
| SRR9715742 | Root | 7.567 |
| SRR9715743 | Root | 5.727 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.915 |
| SRR8749028 | MeJA induced 9h | 2.610 |
| SRR8749029 | MeJA induced 9h | 2.521 |
| SRR8749030 | Uninduced | 2.095 |
| SRR8749031 | Uninduced | 0.651 |
| SRR8749032 | Uninduced | 0.697 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.799 |
| SRR8400027 | Control - Root | 13.765 |