Gene detail

Gene detail information of Glyur000160s00019150

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G05460.1	0	Glycosyl hydrolase family 85
NR	XP_004500516.1	0	PREDICTED: cytosolic endo-beta-N-acetylglucosaminidase-like [Cicer arietinum]
COG	YP_004771296.1	4.00E-29	endo-beta-N-acetylglucosaminidase [Candidatus Arthromitus sp. SFB-mouse-Japan]
trEMBL	tr\|I1MYZ6\|I1MYZ6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G02770.1}

Sequence

Transcript Sequence

>Glyur000160s00019150.1
AAAAAAAGTTGGGGAAGTCTGTAGTTACTGGGTTTGTACTGTGTAGATGTAGTAGAAGTAACATCTCACGTTACCTCCTTTTCATCCTCGTCTTGTTGTGAGGAATCATGAGATGAATAATGATTCCTCGTCTTGTTGGAGGAGCCTATATAAATCGGCGCCAATTCTTAATCACTGTCCGTTCCATCCTCTGTTCCATCCTTCACACAATCCAAAGCCTCTACCTTTTCATCACCATGTCGAAGAACCCCAAATCCGAGACACAACATCCTCAACAACCCTCAGCTCCACCACCCTTCGATCCCACACAACCCTCCGTGCCCATTTCCTACCCAATCAAGACCCTTCAGGAGCTTGAATCTCGCTCCTATTTTGAGTCCTTTCACTACCCTTTTAACAGAGNTTCAGTTCCTCCCATTCTCAACAATGGGGTTTCTCCTTCGTTGCCCAATAGGCGCAGAATGCTGGTGTGCCATGACATGGCTGGTGGTTACTTGGATGACAAGTGGATTCAAGGTGGCACTAATCCTGATGCTTATGCTATATGGCATTGGCATTTGATTGATGTGTTTGTGTACTTTTCACACAGTCTTGTTACTCTTCCTCCCCCTTGCTGGACTAACACAGCTCATCGCCATGGTGTCAAGGTGTTAGGGACTTTCATCACCGAATGGGATGAGGGAAGGGCTACCTGTGATGTACTGCTTTCAACAAAGGAGTCTGCACAAATGTATGCAGAACGTCTGGCAGAGCTTGCTGTTCAGTTAGGCTTCGACGGGTGGCTAATAAATATGGAGGTAAATTTGGATCCACNGCAAATTCCTAATCTGAAAGAGTTTGTAGACCATTTATCATTAACAATGCATTCTTCTGTACCTGGATCATTAGTGTTGTGGTATGACAGTGTTACAATTGATGGTCAACTGAGTTGGCAAGATCAACTAAATGAATCTAATAAGCCATTCTTTGATATATGTGATGGAATATTTGTAAACTATNCATGGAAGGAAAACTATCCAAAGCTCTCTGCTGCTGTGGCCGGGGATCGGAGGTTCGATGTATACATGGGAATTGATGTATTTGGAAGAAACACATATGGTGGTGGACAGTGGAATGTAAATGTTGCTCTTGATGTACTAAGAAAGAATGACATCTCTGCTGCAATATTTGCTCCTGGATGGATCTATGAAACAAAGCAACCACCAGATTTTGAGACTGCTCAGAATAGTTGGTGGGGTCTTGTGGAAAAGTCATGGGGAGTACTGCGAAATTATCCTGGACTACTACCATTCTATACAAATTTTGATCAGGGACGCGGTTATCACATTTCAGTTGATGGAGACAATGTATCAGATGCTACTTGGTGCAACATTTCTTGCCAAGGCTTTCAGCCACTCCTTGAGCTTGCAGATCCTACAAATTCTATCCAAGTTCTTGTAGACTTGAAGGAAGCATCATACAGTGGAGGGGGGAACATTACATTCAAAGGATCTCTTGAAGAGCAAACTTACTTTGAGAGGAAAATCTTTCAAGGAGAGTTTCTTTTGAGCGAGTTGCCTATCCACTTTAATTATTCTGTGAAATCTGATAGCAATTCTTCATTGGGACTTAAGCTTGTGTTCACTTCCAACGAAGTCAAAGGAATGTCTATACTTCTCGCGTCCCGGACAGTGAATCGTTTCTCAAGCAAATTCAGCAAAGTAATCGCGACACGTGAACAAAAGGGATTTTCCCCCGGATGGGTCATAAACGAAGGCGCGATCGCAATGAATGGATACACTTTAACAGAAATCCATGCAGTGTGCTACAGATCAGATTCCCCACCCCCAGATAGCAGTGATGGTTCTGTGGCCACTCCATCAGATTATTTTGCATTTCTTGGTCATATCACAGTCAAGACTTCTGACTATAAGTCGGATTTTCCNGCCTCTTCTTCCTGGTTAGTTGATGGCAAATATATAAAATGGACATCAGATTCTCAGGGTTCATCAAAGACCCTTAACATTAAAATTTCATGGACNCTGAAAGATGGAAAGAATTATCTATTTCTGAAGTACAATGTTTATTTGGTGAAACTATCAAACCAAGTAGGTGGTATAAATCCAGGTACAAGTCTAGAAAGTGTGAAGGAGGAGTACCTTGGAGTAGCACAAGTGAACTGTTTTTATGTTTCTGACCTCAAAGTTCCTTCAGGCACTTCTAGTCTCAAGTTTATAATACAAGTCTGCAGTGTTGATGGGACAGTCCAGGAATTGGATGAGTCTCCATATTATCAATTGGAGGTTGAAGAAGGTCCCTAAATTGTTGTCATTAGAATGTAACATTATTTTTTACTTTCTGCTATAAAGGAAGTGCTATTTTATTTTAGATCTGGACTTGGCAGCTAGATATGTAGAGGCTTATGAACTATGATGCACTAGCCACTAAGCAATAAAGCTTAACTAATAAATTGCTGCTACGTATAATTTCATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00160	39631	47308	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH85

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01227	E3.2.1.96	EC:3.2.1.96	Other glycan degradation	map00511

Gene Ontology

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000160s00019150.1	PF03644.8	Glyco_hydro_85	121	403	1.60E-101

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.226
SRR1783600	control	18.092
SRR1783602	moderate drought stress	13.366
SRR1811619	moderate drought stress	13.295

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.448
DRR006520	Root Summer glycyrrhizin high producing strain	7.300
DRR006521	Root Winter glycyrrhizin high producing strain	6.311
DRR006522	Root Winter glycyrrhizin high producing strain	5.993
DRR006523	Root Summer glycyrrhizin low producing strain	8.302
DRR006524	Root Summer glycyrrhizin low producing strain	8.332
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.003
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.658

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.797
SRR2868004	Drought Stress (root)	21.445
SRR2967015	Control (root)	16.709

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.081
SRR9715740	Leaf	16.514
SRR9715741	Leaf	20.612
SRR9715739	Root	5.662
SRR9715742	Root	13.633
SRR9715743	Root	11.432

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.464
SRR8749028	MeJA induced 9h	16.404
SRR8749029	MeJA induced 9h	6.237
SRR8749030	Uninduced	7.484
SRR8749031	Uninduced	4.051
SRR8749032	Uninduced	3.445

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.597
SRR8400027	Control - Root	22.811