Gene detail information of Glyur000160s00019149.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30130.1 | 2.00E-49 | Lateral organ boundaries (LOB) domain family protein |
| NR | KHN04784.1 | 7.96E-79 | LOB domain-containing protein 12 [Glycine soja] |
| Swissprot | tr|Q8LBW3|LBD12_ARATH | 2.00E-61 | LOB domain-containing protein 12 |
| trEMBL | tr|A0A067FN82|A0A067FN82_CITSI | 1.00E-78 | Uncharacterized protein {ECO:0000313|EMBL:KDO68859.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00160 | 27954 | 29096 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LOB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000160s00019149.1 | PF03195.9 | DUF260 | 8 | 95 | 4.00E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.919 |
| SRR1783600 | control | 1.089 |
| SRR1783602 | moderate drought stress | 0.403 |
| SRR1811619 | moderate drought stress | 0.540 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.086 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.503 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.451 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.230 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.980 |
| SRR2868004 | Drought Stress (root) | 3.317 |
| SRR2967015 | Control (root) | 2.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.197 |
| SRR9715743 | Root | 0.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.138 |
| SRR8749028 | MeJA induced 9h | 1.245 |
| SRR8749029 | MeJA induced 9h | 3.766 |
| SRR8749030 | Uninduced | 0.642 |
| SRR8749031 | Uninduced | 0.169 |
| SRR8749032 | Uninduced | 0.519 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.004 |
| SRR8400027 | Control - Root | 0.864 |