Gene detail information of Glyur000159s00010280 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17790.1 | 1.00E-151 | zinc finger (Ran-binding) family protein |
| NR | XP_004493243.1 | 0 | PREDICTED: zinc finger protein VAR3, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q8S9K3|VAR3_ARATH | 0 | Zinc finger protein VAR3, chloroplastic (Precursor) |
| trEMBL | tr|I1JK58|I1JK58_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G00950.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00159 | 248999 | 252899 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000159s00010280.1 | PF00641.13 | zf-RanBP | 246 | 273 | 2.80E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.775 |
| SRR1783600 | control | 11.754 |
| SRR1783602 | moderate drought stress | 16.463 |
| SRR1811619 | moderate drought stress | 16.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.127 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.676 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.297 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.875 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.268 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.041 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.598 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.006 |
| SRR2868004 | Drought Stress (root) | 14.992 |
| SRR2967015 | Control (root) | 15.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 39.746 |
| SRR9715740 | Leaf | 50.698 |
| SRR9715741 | Leaf | 33.811 |
| SRR9715739 | Root | 3.680 |
| SRR9715742 | Root | 12.497 |
| SRR9715743 | Root | 9.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.498 |
| SRR8749028 | MeJA induced 9h | 17.827 |
| SRR8749029 | MeJA induced 9h | 13.492 |
| SRR8749030 | Uninduced | 11.590 |
| SRR8749031 | Uninduced | 10.185 |
| SRR8749032 | Uninduced | 11.585 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.923 |
| SRR8400027 | Control - Root | 15.594 |