Gene detail information of Glyur000159s00010279 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G17780.1 | 8.00E-100 | alpha/beta-Hydrolases superfamily protein |
| NR | XP_003624751.1 | 0 | hypothetical protein MTR_7g087070 [Medicago truncatula] |
| COG | YP_004776477.1 | 3.00E-16 | alpha/beta hydrolase [Cyclobacterium marinum DSM 745] |
| trEMBL | tr|G7L2L1|G7L2L1_MEDTR | 0 | Alpha/beta fold hydrolase {ECO:0000313|EMBL:AES80969.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00159 | 244401 | 246911 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000159s00010279.1 | PF12697.2 | Abhydrolase_6 | 191 | 403 | 3.80E-30 |
| Glyur000159s00010279.2 | PF12697.2 | Abhydrolase_6 | 135 | 347 | 2.60E-30 |
| Glyur000159s00010279.3 | PF12697.2 | Abhydrolase_6 | 163 | 375 | 3.20E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.755 |
| SRR1783600 | control | 0.651 |
| SRR1783602 | moderate drought stress | 0.601 |
| SRR1811619 | moderate drought stress | 0.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.320 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.325 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.489 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.983 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.136 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.111 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.261 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.676 |
| SRR2868004 | Drought Stress (root) | 11.876 |
| SRR2967015 | Control (root) | 8.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 53.875 |
| SRR9715740 | Leaf | 62.905 |
| SRR9715741 | Leaf | 42.209 |
| SRR9715739 | Root | 1.039 |
| SRR9715742 | Root | 3.507 |
| SRR9715743 | Root | 1.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.828 |
| SRR8749028 | MeJA induced 9h | 7.876 |
| SRR8749029 | MeJA induced 9h | 4.646 |
| SRR8749030 | Uninduced | 3.506 |
| SRR8749031 | Uninduced | 1.656 |
| SRR8749032 | Uninduced | 1.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.216 |
| SRR8400027 | Control - Root | 12.199 |