Gene detail

Gene detail information of Glyur000159s00010275.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G03630.1	5.00E-119	cysteine synthase 26
NR	KHN34626.1	0	Putative cysteine synthase, chloroplastic [Glycine soja]
COG	YP_591171.1	1.00E-103	cysteine synthase [Candidatus Koribacter versatilis Ellin345]
Swissprot	tr\|O22682\|CYSK4_ARATH	1.00E-156	Probable S-sulfocysteine synthase, chloroplastic (Precursor)
trEMBL	tr\|K7MXY9\|K7MXY9_SOYBN	0	Cysteine synthase {ECO:0000256\|RuleBase:RU003985}

Sequence

Transcript Sequence

>Glyur000159s00010275.1
ATGTTATAGTCCCTCCCTTGGAGAACGAGAATGGCGCTATCATCAACAACAACATCATCATCATCATCATCATCATCTTTATTATGCTTTTGTTCTCCTCCTGCTACACTGCTTCCTTCTCGTCCCTTCATTACTCAACGCCACCCTATCCTTAGCGTCCTCAAACCCTATCCTCGTCTTGCTGTCTCCGCTAGAGCTTCAACTCCGTCATCACTCTACGCCACCAGACAAGGACTTGACACCGTCAACATCGCCGAAGATGTCACCCAGTTGATTGGAAATACACCAATGGTGTATCTCAATAAAGTTACAGAAGGATGCGTGGCCAACGTTGCTGCAAAACTTGAGTCCATGGAGCCTTGCCGTAGTGTCAAGGACAGANTCGGCTATAGCATGTTATCTGATGCCGAAGAGAACGGATCAATTTCTCCCGGGAAGACTATTTTAGTTGAACCAACAACTGGAAATACTGGACTTGGCATTGCTTTTGTTGCNGCATCAAAGGGGTACAAACTTATAGTCACAATGCCTGCTTCTGTTAATATTGAGAGGAGAATCCTTTTACGTGCATTCGGTGCGGAGGTTGTGCTGAGTGATGCAGAGAAGGGGCTGAAAGGGGCAGTTGACAAAGCTGAAGAAATTGTTCACAGCATACCCAATGCTTACATGTTTCGACAGTTTGATAACATGACTAATACAAAGATCCACTTNGAAACTACAGCGCCAGAGATATGGGAGGATACCATGGGTAATGTTGATGTATTGGTTGCTGGAATTGGAACTGGTGGCACTATTACAGGCACGGGACGTTATTTGAAAATGATGAACAAAAAAATAAAGGGGCTTGGCTTTATGCTTTTGTTATGTTGTCTTGCTNAGGTAGTTGGGGTGGAACCTGCAGACAGAAGTGTAATCTCAGGAGATAATCCAGGTTTCATTCCAAGTATTTTGGATGTCAAACTGCTTGACGAGGTCATCAAGGTTACCAATGTTGAAGCTGTTGAAATTGCGAGGAGATTAGCATTGGAAGAAGGNTTACTTGTTGGGATTTCTTCTGGAGCTGCAGCAGCAGCTGCAATAAGTTTAGCAAGACGGCCTGAGAATTCTGGAAAACTTATAGTGGTTATTTTTCCTAGTTTTGGTGAGAGNTATATTTCCACTCCCCTCTTCAACTCAATCTATGAAGAGATGCATCCATTTGGACAAGGCACGGTTCTTGCAGCTGAGGTCAGACAGGATGCAAAAGGGGGGTTGACTTGGTGTACAATGTCTTTTTCATTTTTGGTGTTGGTAATCTAGCGTGGCCTTACATTATATTCTTTTCATCATTCTTCAATGTTTTACAGGATTGTTGACATTTTTTNATTTTTCAATTAGTAATACCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00159	214716	219537	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01738	cysK	EC:2.5.1.47	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Sulfur metabolism	map00920
			Cysteine and methionine metabolism	map00270

Gene Ontology

biological_process
GO:0006535 cysteine biosynthetic process from serine

molecular_function
GO:0004124 cysteine synthase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000159s00010275.1	PF00291.20	PALP	78	368	7.20E-52

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.535
SRR1783600	control	5.456
SRR1783602	moderate drought stress	3.617
SRR1811619	moderate drought stress	3.674

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.422
DRR006520	Root Summer glycyrrhizin high producing strain	4.349
DRR006521	Root Winter glycyrrhizin high producing strain	2.231
DRR006522	Root Winter glycyrrhizin high producing strain	2.216
DRR006523	Root Summer glycyrrhizin low producing strain	6.449
DRR006524	Root Summer glycyrrhizin low producing strain	6.688
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.553
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.178

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.591
SRR2868004	Drought Stress (root)	2.221
SRR2967015	Control (root)	2.849

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.513
SRR9715740	Leaf	21.317
SRR9715741	Leaf	5.330
SRR9715739	Root	1.546
SRR9715742	Root	2.322
SRR9715743	Root	2.298

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.070
SRR8749028	MeJA induced 9h	5.888
SRR8749029	MeJA induced 9h	5.844
SRR8749030	Uninduced	1.694
SRR8749031	Uninduced	1.077
SRR8749032	Uninduced	1.210

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.012
SRR8400027	Control - Root	5.760