Gene detail

Gene detail information of Glyur000159s00010269.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G26430.1	2.00E-132	GDSL-like Lipase/Acylhydrolase superfamily protein
NR	KHN34622.1	0	GDSL esterase/lipase [Glycine soja]
COG	YP_436892.1	1.00E-08	phospholipase/lecithinase/hemolysin [Hahella chejuensis KCTC 2396]
Swissprot	tr\|Q9LIN2\|GDL53_ARATH	6.00E-164	GDSL esterase/lipase At3g26430 (Precursor)
trEMBL	tr\|V7CUU5\|V7CUU5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW33904.1}

Sequence

Transcript Sequence

>Glyur000159s00010269.1
CCCGTAATCCCCACCTTTTTCTTTTTCCCTTTGACTGCTTCAGCTACAACATTGTTAATAATATATGAATATGAATATGAAGGCANAGTANTGCAGGTTGATACCATGTATCACNACCCTTTGGCTCGTGTTCTGTGTGGGACNTTGTTCCATTACAAACTCACTAGCTGCTTCTTCTAACTCGAGGCAAAGNCAGTGTCATTTCCCTGCAATCTTCAACTTTGGGGACTCAAATTCAGACACAGGAGGACTTTCTGCTGCTTTTGGACAAGCTGGCCCTCCTAGTGGAGAGACCTTCTTCCATCACCCTGCTGGCCGCTACTCTGATGGCCGTCTCATTATTGATTTCATTGCGGAGAAGTTGGGCATACCATATTTGAATGCATTCCTTGATGCGGTTGGGTCAAATTTTAGCCATGGAGCCAACTTTGCCACTGCTGGATCAACCATTAGACCCCAGAATACAACCCTTCATCAGTTTGGTGGTTTCAGCCCTTTCTCTTTGGANGTTCAATTCAATCAGTTCAATGATTTCCAGCGCAGGACCCAATTTTTTCGCAATAAAGAAGATTTTTCTCGTGCATTGTACACATTTGATATTGGTCAGAATGACTTGGCAGCCGGTTACTTCCACAACATGTCCATAGANCAAGTTAAAGCATATGTTCCTGATGTCTTGGCTCAATTCAAGACTATAATTGAGTATGTATATGATCATGGAGGAAGGTCATTTTGGGTTCACAATACGGGTCCTGTTGGTTGTTTGCCATACATTTTGGATCTTCACCCAATAAAAGCAAATGCGGTGGACAAAGTAGGATGTGCAATCCCTTACAATGAAGTGGCTCAGTTCTTCAATCGTAAATTGAAAGCAATTGTTGTTCAACTTAGAAAAAAACTCCCCTTAGCTGCCATCACCTATGTTGATGTTTACTCGGTGAAGTACTCTCTCATTAGTCAAGCAAAGAAACATGGATTTGAGGAACCGTTGTGGGCTTGTTGTGGGCACGGTGGGAAGTACAACTACAATATGCATATTGGATGTGGAACAAAGATTAAGATTCGTGGGAAAGAAATTCTAGTGGGAAAACCATGCAAGGATCCATCGGTTAGGATTAATTGGGATGGTGTTCATTACACTCAAGCTGCTAATAAATTTGTGTTTGATCATATTGTAGATGGTTCATTTTCTGANCCACCTATTCCTTTGAACATGGCTTGTCATAAGCACCTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00159	189554	192482	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GHnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000159s00010269.1	PF00657.17	Lipase_GDSL	50	370	2.10E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.507
SRR1783600	control	7.446
SRR1783602	moderate drought stress	4.440
SRR1811619	moderate drought stress	4.592

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.239
DRR006520	Root Summer glycyrrhizin high producing strain	1.188
DRR006521	Root Winter glycyrrhizin high producing strain	0.360
DRR006522	Root Winter glycyrrhizin high producing strain	0.319
DRR006523	Root Summer glycyrrhizin low producing strain	0.534
DRR006524	Root Summer glycyrrhizin low producing strain	0.625
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.578
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.680

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.832
SRR2868004	Drought Stress (root)	5.887
SRR2967015	Control (root)	8.928

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.520
SRR9715740	Leaf	0.469
SRR9715741	Leaf	0.816
SRR9715739	Root	2.416
SRR9715742	Root	3.163
SRR9715743	Root	2.378

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.497
SRR8749028	MeJA induced 9h	0.412
SRR8749029	MeJA induced 9h	0.857
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.250
SRR8749032	Uninduced	0.314

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.593
SRR8400027	Control - Root	12.622