Gene detail

Gene detail information of Glyur000159s00010263

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G33110.1	5.00E-169	MATE efflux family protein
NR	XP_003624780.1	0	Protein TRANSPARENT TESTA [Medicago truncatula]
COG	YP_003264696.1	6.00E-23	MATE efflux family protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q9LYT3\|TT12_ARATH	9.00E-107	Protein TRANSPARENT TESTA 12
trEMBL	tr\|G7L2P0\|G7L2P0_MEDTR	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000159s00010263.1
ATGGGAGAGAAGGAGCTAAAGGAGCAGATTTTGCAGCAGCAGCAGCGGAACACTAATTCAGAGGAAGAAGAAGAAGAAGAGTCACTGAGGAAAAGGGCATGGGAAGAAAGCAAGAAGATGTGGGTGGTAGCAGGCCCTGCCATATTCACAAGGTTCTCAACATTTGGAATCACCGTAGTGAGTCAATCCTTCATTGGTCATATTGGCTCCACTGAACTAGCTGCATATGCCCTTGTCCAAACTGTCCTAGTCAGGTTTGCAAATGGTCTGGGTATGGCAAGTGCACNGGAAACTCTGTGTGGTCAAGCATATGGGGCCAAACAATATGACATGCTTGGAGTGTATCTACAAAGGTCATGGATAGTCTTGTTCATTACCTCTTTGTTTCTTCTCCCTNTTTACATCTTCACCACCCCAATTCTAGAGGCTCTTGGACAAGAAAAGAACATTGCCCGGGTTGCTGGAAGCATTTCTCTATGGTCAATAGGTATTGTCTTTGCTTTCTCTGCATCATTCACCTGCCAAATGTTCCTACAAGCACAGAGCAAGAACAAGATTATTGCTTACCTGGCAGCTGTTTCAATTTCACTCCACGTTTTCTTGTCATGGCTTTTGACTGTTAAGTACAAGTTTGGCCTCAATGGTGCAATGACATCAATCATTCTTGCTTACTGGATACCAAACTTGGGCCAACTTGTGTTTATCATGAATAAGTGCCCTGACACATGGAAGGGTTTCTCATTTTTGGCTTTCAAAGATCTCTGTCTTGAGATCTGGTACAACACAGTTTTGATTCTTCTAACAGGGAACATGGAAAATGCTGAGGTTTCCATTGATGCTCTGGCCATATGCCTCAACATCAATGGGTGGGAAATGATGATAGCCCTTGGTTTCTTCGCTGCAGCTAGTGTTCGGGTGTCAAATGAGCTTGGAAGAGGGAGTTCAAAGGCAGCAAAATTCTCCATTGTGATAACAGTGCTCACATCGTTTTCTATTGGGTTCGTGCTATTCTTGGTGTTTCTGTTTCTGAGGGAAANACTTGCTTACATTTTCACTCCAAACCCAAAGGTGGCTGAAGCAGTTGGGGATTTGTCACCTTTGCTTTCAATCTCCATGTTGTTGAACAGTGTCCAACCNGTGCTCTCTGGAGTTTCTGTTGGAGCTGGATGGCAAAGCGTTGTAGCATATGTGAACATAGGGTGTTATTACCTGATTGGTATTCCTATTGGAGTGGTACTTGGTAACCTTCTCCATTTGCAAGTTAAGGGTGTCTGGATTGGAATGTTGTTTGGAACATTTGTTCAAACCGTAATGCTTATCACAATCACAATGAAAACTGATTGGGACAAGCAGGTAGAGATTGCTCGAAATCGTGTTAACAAATGGGCTGTAGTGGAGAACGACGAATCAAACACCAGATCAAACATATCTAGGCCTNCCTAGCTTATAAATAGTATATCTAGCACTTGATATTTCAGTAATTTTGTCTCTTGATCAATTGTTTTACAAACATAAAACANCTCATGAAAAAATAATGAAGAATAGAAGTAACAGAGAAGAATGTGAATGTAATTCATTAATTCTGTCAAAATAATGTAATTCATTAATGTTTAATATCTTTTAGAATTCGTGGATCTAATTTATTCTTACAAAATCGGCTTGTAAATTGAGTGGTGTTCTTACATTATATACTCTTTTATGACCTTATCTCTAGTCGATGTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00159	164246	169758	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000159s00010263.1	PF01554.13	MatE	46	204	1.10E-24
Glyur000159s00010263.1	PF01554.13	MatE	254	412	2.50E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.066
SRR1783600	control	4.179
SRR1783602	moderate drought stress	3.985
SRR1811619	moderate drought stress	3.929

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.145
DRR006520	Root Summer glycyrrhizin high producing strain	4.058
DRR006521	Root Winter glycyrrhizin high producing strain	0.711
DRR006522	Root Winter glycyrrhizin high producing strain	0.701
DRR006523	Root Summer glycyrrhizin low producing strain	8.498
DRR006524	Root Summer glycyrrhizin low producing strain	8.765
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.372
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.330

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.236
SRR2868004	Drought Stress (root)	41.433
SRR2967015	Control (root)	31.769

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.904
SRR9715740	Leaf	16.743
SRR9715741	Leaf	4.934
SRR9715739	Root	2.069
SRR9715742	Root	9.577
SRR9715743	Root	8.369

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.440
SRR8400027	Control - Root	9.660