Gene detail

Gene detail information of Glyur000159s00010260

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G33110.1	4.00E-133	MATE efflux family protein
NR	XP_004493257.1	0	PREDICTED: protein TRANSPARENT TESTA 12-like [Cicer arietinum]
COG	YP_007377480.1	6.00E-07	multidrug efflux pump, matE family [Nonlabens dokdonensis DSW-6]
Swissprot	tr\|Q9LYT3\|TT12_ARATH	2.00E-72	Protein TRANSPARENT TESTA 12
trEMBL	tr\|G7L2P1\|G7L2P1_MEDTR	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000159s00010260.1
GTTTTGCCTATGGTTCGGTACAGTGCATGACACGACCAGTGATTGGTCAATTATAAAACGCATCACGTTTTATATAACCACTCCAACTCATTTCCCTTTAATTTCTGCGTTGAGTACAACACAGAACAGACAGCATAGCATTGCATAGTCTCTCTTCCTTTTTAGGCAACCCCTGAAGCCAAAACACGTGAAAGTGAATAATGAAAATGGAGGGAGAAGATCTAAAGCAGAAGCTACTGCGAACGGAGAAAGTAGAAGAAGAAGAAGAAGAAGAAGAGGGATTGTCACTGTGGAAGAGGGTATTGGGAGAGAGCAAGCTGATGTGGGTAGTGGCAGCACCAGCCATATTCACAAGGTTCTCCACTTTTGGGATTCAAGTTATTAGTCAGGCATTTGTTGGNCATATTGGTTCTAGAGAACTCGCTGCTTTTGCTCTTGTTTTCACTGTTCTCATAAGGTTCGCCAATGGTATTCTGTTGGGAATGGCCAGCGCTTTGTCAACACTGTGTGGACAAGCATACGGTGCAAAAGAGTATGGGATGATGGGAGTGTATCTTCAAAGGTCATGGATAGTTCTNTTCCTAACTGCAGTAGTTCTTCTCCCTGTGTTCATCTTCACAACCCCAATTTTGACACTCCTAGGCCAAGATGAAAGCATAGCACAAGTGGCAGGAACCATTTCTCTTTGGTCAATTCCTGTTATGTTTGCTTTCATTGTTTCATTCACATGCCAGACATTCCTTCAATCCCAAAGCAAGAACACCATCATTGCATTCTTGGCAGCTTTCTCCATAATTATCCATGCATTGCTCTCCTGGCTCTTGACCATGAAATACAAGCTCGGGCTTGCTGGTGCAATGATCTCAACAAGTTTGGCTTACTGGATTCCCAATATTGGTCAACTCATATTTGTTACTTGTGGTTGGTGCCCTGNGACATGGAAAGGTTTCTCATTTCTAGCTTTCAAGGACCTCTGGCCTGTTGTCAAACTTTCCCTTTCAGCTGGGAACATGAAGAATGCAGAGGTTGAAATTGATGCTCTATCTATATGTCTCAACATCAATGGATGGGAAATGATGATATCACTTGGTTTCATGGCTGCAGCAAGTGTTCGAGTAGCAAATGAACTTGGAAAAGGAAGTGCCAAAGCTGCAAAGTTCTCGATTGTTGTGACAACCCTTACATCATTGTCCATCGGGGAAAGACTTGCTTATATATTTACCTCAAACAAAGACGTGGCCAATGCTGTTGGGGAATTGTCACCCTTGTTATCAATCTCTATACTACTAAACAGTGTTCAACCTGTACTCTCAGGAGTAGCTATTGGAGCAGGATGGCAAAGCATTGTGGCATATGTCAACATAGTGCTAACTGTAATCACCTACAAAACCAACTGGGACGAACAGGTCACCGTAGCTCGTAATCGTGTTAACAGGTGGTCCAAGGTGGACAGTTCTGATCAAGAAACAGAAACAAAACATGGAGATCAAGATGCAAAGGAGAAGCTGCTGAGCATAGTGAAAGCATCATCATATGAGGAAGAAGAAAAGGAATTGTCATTGGGGAAGAGGGTGTGGAAGGAGAGCAAGTTGATGTGGATAGTGGCAGGACCAGCCATATTCACAAGATGGCTCCACTTTTGGGATCCAAATTATCAGCCAGGCATTTGTTGGCCATATTGGGTCAAGCATAAGGGACTCAAATTAAAAATGGAGGGAGATCAAGATGCAAAGGAGAAGCTGCTGAGCANAGTGAAAGCATCATCATATGAGGAAGAAGAAAAGGAATTGTCATTGGGGAAGAGGGTGTGGAAGGAGAGCAAGTTGATGTGGATAGTGGCAGGACCAGCCATATTCACAAGATGCTCCACTTTTGGGATCCAAATTATCAGCCAGGCATTTGTTGGCCATATTGGGTCAAGGGAACTCGCTGCCTATTCTCTTGTTTTCACTGTTCTCGTTAGATTTGTCAATGGCTTGATGTTAGGAATGGCAAGCGCTTTGGCAACACTATGTGGACAAGCATATGGTGCAAGAGAGTATGGCATGATGGGAGTGTATCTTCAAAGATCATGGATAGTTCTGTTCTTAACAGCACTTGTTTTTCTTCCTGTGTTCATCTTCACAACCCCAATTTTGACACTCCTAGGCCAAGATGAAAGCATATCACAAGTGGCAGGAACCATTTCTCTTTGGTCAATTCCTGTTCTGTTTGCCTTCATTGTCTCCTTCACATGCCAGACATTCCTTCAATCACAGAGCAAGAACACCATCATTGCATTCTTGGCAGCTTTCTCCATTGTTGTCCATGCATTCCTCTCTTGGCTATTGACCATGAGATACAAGCTTGGGATTGCTGGTGCAATGACTTCAACCATTTTGGCTTTCTGGATCCCCAACATTGGCCAGCTCATATTTATTACATGTGGTTGGTGCAATGAGACTTGGAAAGGTTTCTCATTTTCGGCTTTCAAAGATCTCTTGCCTGTTGTCAAGCTTTCCCTTTCATCCGGCAACATGGAAAATGCAGAGGTTGAAATTGATGCTCTATCCATATGTCTCAACATCANTGGATGGGAAATGATGATATCACTTGGTTTCATGGCTGCAGCAAGTGTTCGAGTGGCAAATGAGCTTGGAAAAGGAAGCTCCAAAGCTGCAAAGTTCTCTGTAGCTATGACAGTGCTTACATCCTTCACAATTGGATTCCTTCTGTTTTTGTTTTTCTTATTCTTTAGGGAAAGACTTGCTTATATATTCACCTCAGATGAAGACGTGGCCAATGCTGTTGGGGATTTGTCTCCTCTGAGTTGCTATTGGAGCAGGCTGGCAAAGCATTGTGGCATATGTGAACCTGGGATGTTATTACATCATTGGTATTCCGGAGTTGTACTCGGTAACGTTTTCAAATTGCAAGTCAAGGGTATTTGGATTGGAATGTTGTTTGGAACACTTATCCAAACTATAGTGCTAACTATAATCAGCTACAAAACTGATTGGGACAAGCAGATAACTATTGCTCGTAACCGTATTAACAAGTGGTCTAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00159	141962	157387	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000159s00010260.1	PF01554.13	MatE	47	207	1.20E-26
Glyur000159s00010260.1	PF01554.13	MatE	275	392	5.10E-19
Glyur000159s00010260.1	PF01554.13	MatE	549	709	5.20E-27
Glyur000159s00010260.1	PF01554.13	MatE	777	870	3.10E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.612
SRR1783600	control	4.471
SRR1783602	moderate drought stress	2.791
SRR1811619	moderate drought stress	2.804

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.144
DRR006520	Root Summer glycyrrhizin high producing strain	5.908
DRR006521	Root Winter glycyrrhizin high producing strain	15.972
DRR006522	Root Winter glycyrrhizin high producing strain	16.208
DRR006523	Root Summer glycyrrhizin low producing strain	3.512
DRR006524	Root Summer glycyrrhizin low producing strain	3.684
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.399
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.579

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.634
SRR2868004	Drought Stress (root)	5.992
SRR2967015	Control (root)	4.544

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.290
SRR9715740	Leaf	39.061
SRR9715741	Leaf	23.610
SRR9715739	Root	1.966
SRR9715742	Root	7.827
SRR9715743	Root	7.069

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.062
SRR8749028	MeJA induced 9h	21.254
SRR8749029	MeJA induced 9h	22.998
SRR8749030	Uninduced	42.795
SRR8749031	Uninduced	36.309
SRR8749032	Uninduced	29.410

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.071
SRR8400027	Control - Root	8.837