Gene detail information of Glyur000159s00010259 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G03610.1 | 1.00E-123 | ELMO/CED-12 family protein |
| NR | XP_003520766.1 | 0 | PREDICTED: ELMO domain-containing protein A-like isoform X1 [Glycine max] |
| trEMBL | tr|I1JK39|I1JK39_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G00740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00159 | 136434 | 140806 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000159s00010259.1 | PF04727.8 | ELMO_CED12 | 121 | 290 | 1.20E-52 |
| Glyur000159s00010259.2 | PF04727.8 | ELMO_CED12 | 121 | 290 | 1.20E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.396 |
| SRR1783600 | control | 6.487 |
| SRR1783602 | moderate drought stress | 6.138 |
| SRR1811619 | moderate drought stress | 6.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.136 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.164 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.197 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.186 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 32.654 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 32.028 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.640 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.108 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.000 |
| SRR2868004 | Drought Stress (root) | 37.172 |
| SRR2967015 | Control (root) | 33.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 33.942 |
| SRR9715740 | Leaf | 30.119 |
| SRR9715741 | Leaf | 45.691 |
| SRR9715739 | Root | 10.866 |
| SRR9715742 | Root | 22.039 |
| SRR9715743 | Root | 19.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.963 |
| SRR8749028 | MeJA induced 9h | 29.462 |
| SRR8749029 | MeJA induced 9h | 28.980 |
| SRR8749030 | Uninduced | 34.327 |
| SRR8749031 | Uninduced | 27.126 |
| SRR8749032 | Uninduced | 24.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.487 |
| SRR8400027 | Control - Root | 29.383 |