Gene detail

Gene detail information of Glyur000159s00010254

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G22180.2	1.00E-86	Sec14p-like phosphatidylinositol transfer family protein
NR	AFK36318.1	0	unknown [Lotus japonicus]
Swissprot	tr\|Q93ZE9\|SFH3_ARATH	2.00E-13	Phosphatidylinositol/phosphatidylcholine transfer protein SFH3
trEMBL	tr\|I3S7S6\|I3S7S6_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK36318.1}

Sequence

Transcript Sequence

>Glyur000159s00010254.1
CCGCATTTCAACACATTCAACTGGGTAGTTACGTCCTCATGGTTCTCTGTGATGGCCACGTGTTCTTCCTCATCTCCTCTCCTTCTTCATTCATGATCCTCATTCTTCTCTCAGTTTCCTTCCTTTTTTTTTTCCACCAAAAAATTTTTTGTCCTTCTTCTCTCTCTGATTATCTCTTCATCATTCCACACTCTGTTCAGTCTGGTTGGCTTCGTGTTTCCGTGTAGAGCCCCATATTGATGCCATCGGTTTGATTTGTTGCCCCNTGATGTTTTAGGTTGATCAAGATTTGAAAAGAAAGATGTCATTTAAGAAATTGAAAGAAAGTGCAACTGAGAAAATTTTATCTCCTGAGGAGCAGCAGGCCAAGATTGCAGATGTCAGAAAGATAATTGGTCCAATTGCCGACAAGTTCCCAACTATGTGTTCAGATGCATCAGTGCTAAGGTTTCTTAGAGCACGAAACTATAATACTAAGAAGGCTGCAAAGATGTTGAAAGGGACCATAAAATGGAGGCTGGAGTTCAAGCCTGAGAAGATTCAATGGGATGACGTAGCTAAAGAAGCTCTTANGGGAAGGCTATATAGAGCCGATTACTTGGACAAGCAAGGAAGGATTGTTTTTGTTATCAAAGCTGGACTTCAGAGTACAAACCCAGGAATTATGCAGATCAAGTACCTCGTTTACTGTTTGGAGAATGCCATATCGAGTCTAAGTTCCAAACAAGAACAGATGGTTTGGCTTATTGATTTTCATGGGTGGAACACATCGTGCATATCATTAAAGGTCACCCGAGATACTGCTCACNTCCTGCAGAGTCATTACCCTGAAAGGTTGGGCCTTGCAATCTTGTACAATCCGCCGAAGATGTTTGAGTCATTTTGGACGATGGTGAAACCATTTCTTGAACCCAAGACTTACAAAAAGGCGACATTTGCTTACCCTGACAACCCAAGGAGCCGCAAGATAATGGAAGAACTCTTTGATATGGACAAGCTGGAATCCTGTTTTGGTGGGAAAAATACAGTTGGATTTAACTATGAAGCTTATGCTCAAAAAATGAGAGAAGATGACAGAAGGGTGTCTGATATTATTGGTTCTGGCTGTTCATCGGAAGTTAATGAAGCACTGCATTCAAGAGACNATGATTCTGATGATGAAACATCTGGTGATGAAGCAGTTTGTTCAAACTTGGAGGAACATGATGAGATTATACATGGTCATATGCCTTACTCCCAACATGAGCCCAAGAATGAGGTTCATGAACCCAAAAACGAGTGAAGAGCTGAATCAGAAGAGCACTGGGCACTAGCAGGGTCAATTATATATTACTTATTCAAAATTTACCCAAACCCTGACTTCAACCAATATGTACTGTTGGTTTTAAAGTGACATCTGCACCCTTGCTCTCAACCAATCACTATCTACAGCAGCAGAAGTCAATATATGGGGCCATGCACTTTTTCACTGAAAAGTGGGAGGAAGTTTGAGTTGGCTCTTTTGGCATGCAAATTCAACCAGCACTCAGGACATAGAAAGTTCAGATTTCTGTCATGTTATTTTCCCCTGCCTCTCTCACCCTAGTGGAGTGNGGTTGTGGTGGGGTGTGTATGTGAAATGTCTAAGGATATGATGAGAAACACTACCCACCACTTTTTCATGTACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00159	109021	113149	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000159s00010254.1	PF03765.10	CRAL_TRIO_N	22	67	1.90E-07
Glyur000159s00010254.1	PF00650.15	CRAL_TRIO	98	240	1.10E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.890
SRR1783600	control	1.897
SRR1783602	moderate drought stress	1.267
SRR1811619	moderate drought stress	1.348

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.917
DRR006520	Root Summer glycyrrhizin high producing strain	0.838
DRR006521	Root Winter glycyrrhizin high producing strain	8.803
DRR006522	Root Winter glycyrrhizin high producing strain	8.429
DRR006523	Root Summer glycyrrhizin low producing strain	0.529
DRR006524	Root Summer glycyrrhizin low producing strain	0.527
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.028
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.781

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.196
SRR2868004	Drought Stress (root)	3.118
SRR2967015	Control (root)	2.322

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.118
SRR9715740	Leaf	27.513
SRR9715741	Leaf	14.935
SRR9715739	Root	0.466
SRR9715742	Root	0.969
SRR9715743	Root	0.455

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.077
SRR8749028	MeJA induced 9h	8.723
SRR8749029	MeJA induced 9h	6.174
SRR8749030	Uninduced	8.638
SRR8749031	Uninduced	6.883
SRR8749032	Uninduced	5.287

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.334
SRR8400027	Control - Root	2.509