Gene detail information of Glyur000159s00010249 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24380.1 | 2.00E-52 | |
| NR | KHN34600.1 | 7.72E-141 | Dihydrofolate reductase [Glycine soja] |
| Swissprot | tr|Q94AC1|STR6_ARATH | 3.00E-13 | Rhodanese-like domain-containing protein 6 |
| trEMBL | tr|I1JK28|I1JK28_SOYBN | 1.00E-143 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G00660.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00159 | 78389 | 87043 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000159s00010249.1 | PF03959.8 | FSH1 | 7 | 198 | 6.50E-49 |
| Glyur000159s00010249.1 | PF03959.8 | FSH1 | 266 | 409 | 2.90E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.447 |
| SRR1783600 | control | 10.592 |
| SRR1783602 | moderate drought stress | 8.902 |
| SRR1811619 | moderate drought stress | 8.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.270 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.547 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.077 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.041 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.175 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.193 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.771 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.477 |
| SRR2868004 | Drought Stress (root) | 4.250 |
| SRR2967015 | Control (root) | 7.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 43.894 |
| SRR9715740 | Leaf | 13.690 |
| SRR9715741 | Leaf | 16.345 |
| SRR9715739 | Root | 5.762 |
| SRR9715742 | Root | 5.885 |
| SRR9715743 | Root | 7.793 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.094 |
| SRR8749028 | MeJA induced 9h | 0.116 |
| SRR8749029 | MeJA induced 9h | 0.065 |
| SRR8749030 | Uninduced | 0.878 |
| SRR8749031 | Uninduced | 0.681 |
| SRR8749032 | Uninduced | 0.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.332 |
| SRR8400027 | Control - Root | 14.820 |