Gene detail information of Glyur000159s00010247 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27030.3 | 2.00E-80 | calmodulin 5 |
| NR | XP_003624801.1 | 3.92E-101 | Calmodulin [Medicago truncatula] |
| COG | YP_001866396.1 | 2.00E-36 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|P17928|CALM_MEDSA | 8.00E-103 | Calmodulin |
| trEMBL | tr|G7L3N5|G7L3N5_MEDTR | 1.00E-101 | EF hand calcium-binding family protein {ECO:0000313|EMBL:AES81019.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00159 | 67469 | 68128 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000159s00010247.1 | PF13499.1 | EF-hand_7 | 14 | 73 | 5.10E-15 |
| Glyur000159s00010247.1 | PF13499.1 | EF-hand_7 | 86 | 146 | 6.00E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.784 |
| SRR1783600 | control | 15.826 |
| SRR1783602 | moderate drought stress | 5.228 |
| SRR1811619 | moderate drought stress | 5.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.377 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.326 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.433 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.924 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.298 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.593 |
| SRR2868004 | Drought Stress (root) | 9.680 |
| SRR2967015 | Control (root) | 7.345 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.054 |
| SRR9715740 | Leaf | 1.734 |
| SRR9715741 | Leaf | 2.035 |
| SRR9715739 | Root | 2.497 |
| SRR9715742 | Root | 2.172 |
| SRR9715743 | Root | 2.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.687 |
| SRR8749028 | MeJA induced 9h | 2.194 |
| SRR8749029 | MeJA induced 9h | 3.482 |
| SRR8749030 | Uninduced | 1.864 |
| SRR8749031 | Uninduced | 0.692 |
| SRR8749032 | Uninduced | 1.527 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 11.405 |
| SRR8400027 | Control - Root | 10.969 |