Gene detail

Gene detail information of Glyur000159s00010242

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04200.1	3.00E-112	metacaspase 9
NR	XP_004493282.1	0	PREDICTED: metacaspase-9-like [Cicer arietinum]
COG	YP_003206954.1	1.00E-17	Caspase-1, p20 [Candidatus Methylomirabilis oxyfera]
Swissprot	tr\|Q9FYE1\|MCA9_ARATH	3.00E-143	Metacaspase-9 subunit p10
trEMBL	tr\|Q2HUG6\|Q2HUG6_MEDTR	1.00E-174	Peptidase C14, caspase catalytic subunit p20 {ECO:0000313\|EMBL:ABD28668.1}

Sequence

Transcript Sequence

>Glyur000159s00010242.1
CAATCATCTTTAATTTGATCAACTTGCTTTGTTTGAGAGTTGAAGAAGTACTGAATATTGCAATGGAGGGGAAGCAGAACAACAAGAAGAGGCTGGCAGTTTTGGTGGGTTGCAATTACCCCAACACTCCCAATGAATTGCATGGTTGCATAAACGATGTGTTGGCCATGCGTCACACGTTGGTGAAGCGCTTTGGTTTTGACCCCAACAACATTGAGCTCCTCACTGATGAGAAGCCTGGCTCTAATTCATCAACTATGCCCACTGGTGCCAACATTAAGAACGCATTGGGTAGCATGGTTGAAAAAGCTGAAGCAGGGGATGTGCTTTATTTTCACTACAGTGGACATGGGACAAGGATCCCTTCCATGAAACGTGCCCATCCCTTCCGCCATGAGGAAGCCATTGTGCCTTGTGACTTCAATCTCATCACTGATTTGGACTTCAGGCAACTAGTGAACCGGCTGCCAAAGGGAGCAAGCCTCACAATTCTCTCAGACTCATGNCATAGTGGTGGCCTAATTGACAAAGAGAAGGAACAGATTGGACCATCCTCAATATTGGATAATGACAAAAATGCCACACCACAGAAANTCAGCTATACCCTCAAGGCCAAGACAGTTCCCTTTGAGTCAGTACTCCAACACCTCTCATCACTCACAAATATAAATACCACAGACATAGGAACACATCTGCTAGAGTTCTTTGGCTCAGAAGCCAGTTTGAGGTTCCAGATTCCCTTGCTTGATGATCTTGATGATGATGATTTGTTCCAACCATTGAGGCCTGATGATGGGATTCTGTTGAGTGGTTGCCAATCTGATGAGACCTCTGCAGACATGAACCCAAATATGAATATCAGTGGTGGTGAAAATAATAATGGAAAGGCTTATGGGGCATTTAGCAATGCAGTTCAGATGGTGTTAAAGGATAACCCGGGTGAGTTAAGCAATAGAGAGGTTGTGGTGAAGGCTAGGAATATCCTACAAGCACAAGGGTTTGCACAACACCCTTGCCTCTATTGCAGTGATGAGAATGCCAATGCTACCTTCTTGTGGCAATCTCAGAACACAGATTTGTGAGAATATGCATCATCTGTTATGCTGAGTTTGATGTGTGGAACATTTGAGGNGTGACAGCTGAAATCAAAACTCTTTTGAGTTATCACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00159	40126	42218	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004197 cysteine-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000159s00010242.1	PF00656.17	Peptidase_C14	10	330	1.30E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.130
SRR1811619	moderate drought stress	0.130

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.429
DRR006520	Root Summer glycyrrhizin high producing strain	3.400
DRR006521	Root Winter glycyrrhizin high producing strain	0.190
DRR006522	Root Winter glycyrrhizin high producing strain	0.093
DRR006523	Root Summer glycyrrhizin low producing strain	6.603
DRR006524	Root Summer glycyrrhizin low producing strain	6.418
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.157
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.115

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.741
SRR2868004	Drought Stress (root)	7.845
SRR2967015	Control (root)	9.096

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.056
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	2.487
SRR9715743	Root	1.840

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.054
SRR8749028	MeJA induced 9h	0.116
SRR8749029	MeJA induced 9h	0.104
SRR8749030	Uninduced	0.054
SRR8749031	Uninduced	0.072
SRR8749032	Uninduced	0.283

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.243
SRR8400027	Control - Root	2.599