Gene detail information of Glyur000158s00011371 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19160.1 | 8.00E-156 | TRICHOME BIREFRINGENCE-LIKE 11 |
| NR | XP_003553456.2 | 0 | PREDICTED: protein YLS7-like isoform X1 [Glycine max] |
| Swissprot | tr|Q5BPJ0|TBL11_ARATH | 0 | Protein trichome birefringence-like 11 |
| trEMBL | tr|I1N9G3|I1N9G3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G33730.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00158 | 233047 | 237376 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000158s00011371.1 | PF14416.1 | PMR5N | 81 | 134 | 4.10E-23 |
| Glyur000158s00011371.1 | PF13839.1 | PC-Esterase | 135 | 425 | 4.10E-74 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.064 |
| SRR1783600 | control | 5.140 |
| SRR1783602 | moderate drought stress | 5.352 |
| SRR1811619 | moderate drought stress | 5.167 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.290 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.119 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.837 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.346 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.954 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.010 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.779 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.947 |
| SRR2868004 | Drought Stress (root) | 25.342 |
| SRR2967015 | Control (root) | 20.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.831 |
| SRR9715740 | Leaf | 9.808 |
| SRR9715741 | Leaf | 12.491 |
| SRR9715739 | Root | 3.666 |
| SRR9715742 | Root | 12.203 |
| SRR9715743 | Root | 10.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.772 |
| SRR8749028 | MeJA induced 9h | 15.605 |
| SRR8749029 | MeJA induced 9h | 2.749 |
| SRR8749030 | Uninduced | 6.422 |
| SRR8749031 | Uninduced | 6.961 |
| SRR8749032 | Uninduced | 1.676 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 22.984 |
| SRR8400027 | Control - Root | 32.221 |