Gene detail

Gene detail information of Glyur000158s00011367

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02840.1	5.00E-48	Small nuclear ribonucleoprotein family protein
NR	KHF99961.1	4.24E-73	Small nuclear ribonucleoprotein Sm D1 [Gossypium arboreum]
Swissprot	tr\|Q43582\|LSM4_TOBAC	1.00E-08	Probable U6 snRNA-associated Sm-like protein LSm4
trEMBL	tr\|B9S445\|B9S445_RICCO	5.00E-73	Small nuclear ribonucleoprotein sm d1, putative {ECO:0000313\|EMBL:EEF41726.1}

Sequence

Transcript Sequence

>Glyur000158s00011367.1
GCCTAAACTAGTGCTTGTGCCGCGGTCAGCGAGTTTCCTCTGTGACCCTGCCTTTCATCTTCTCTTCTCCGCCACCATGAAGCTCGTTAGGTTTCTCATGAAGTTGAACAACGAAACCGTCTCAATCGAGCTCAAGAATGGTACTATTGTTCATGGCACCATTACAGGTGTTGATATCAGTATGAATACACATTTGAAAACAGTTAAACTAACCCTGAAAGGGAAAAACCCAGTTACTTTGGATCATCTCAGCGTGAGAGGCAACAACATTCGTTACTATATCCTTCCTGACAGCTTGAATCTTGAGACTTTACTGGTTGAAGAGACTCCTAGGGTCAAGCCTAAGAAGCCAACTGCTGGGAAGCCTTTGGGGAGAGGGAGAGGGCGCGGACGTGGGCGNGGGCGCGGACGTGGCCGTTAAGCTGCGGGAAACAATTTTTGTGGATTTGGTTGTACCTTTATTGTAGGGAAATTTTCTGGGCGGTTTAAAAGACATCAAAGGATTGTTTGTTATTGTTATTTAGTTGTGTTGANTTTGTCAATGATGCTATTTTCTTACGCCAGTGCTTTGAAGATCTAGTTTATAATTCCTTACGGATAATGCCAGTTGCTTTGGAAAGAAAGGCATGGATCCCAGAAACTGTCAACATGGAAATAGGTCAATTATTCAACATTGCTACTAGATCTTACGAGTAAAAGGTAAATAGTGGGAGATATGTGATCATAAACCTTCTGCTTTTGCCAAGAAAAAGAACCTATTTTATTTTACTGACAATCATGTTTCAGGAGTTTACCAAATCCCAGCATCAAGTGCAGTAAAATGAGTCAAGGTAGAAATAGAAGTCAGAGTTCTTCGTAATATTCTTTTTTATATTTTGGTCAAGAGTGAACATAAAATGTGAGAGCTTTAATAACAAAATTAATAGCTAAGAAATCGTCCAATNGTTTCCTGATAATACTTTACACAATCAGGTTATGCAAGCATGTAGCCTGCAAGTNTGAGACATGACAACTGGCTTCGAAAGTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00158	203058	206514	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000158s00011367.1	PF01423.17	LSM	6	70	6.40E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	28.126
SRR1783600	control	27.977
SRR1783602	moderate drought stress	27.640
SRR1811619	moderate drought stress	27.734

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.048
DRR006520	Root Summer glycyrrhizin high producing strain	29.048
DRR006521	Root Winter glycyrrhizin high producing strain	35.775
DRR006522	Root Winter glycyrrhizin high producing strain	34.674
DRR006523	Root Summer glycyrrhizin low producing strain	44.557
DRR006524	Root Summer glycyrrhizin low producing strain	45.452
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.134
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.067

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	62.321
SRR2868004	Drought Stress (root)	50.443
SRR2967015	Control (root)	44.759

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.788
SRR9715740	Leaf	35.642
SRR9715741	Leaf	28.899
SRR9715739	Root	33.448
SRR9715742	Root	26.023
SRR9715743	Root	24.945

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.517
SRR8749028	MeJA induced 9h	18.273
SRR8749029	MeJA induced 9h	29.214
SRR8749030	Uninduced	14.047
SRR8749031	Uninduced	4.866
SRR8749032	Uninduced	13.981

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.546
SRR8400027	Control - Root	46.901