Gene detail

Gene detail information of Glyur000158s00011364

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G03220.1	4.00E-72	Eukaryotic aspartyl protease family protein
NR	XP_003520561.1	0	PREDICTED: basic 7S globulin-like [Glycine max]
Swissprot	tr\|P13917\|7SB1_SOYBN	1.00E-52	Basic 7S globulin low kDa subunit (Precursor)
trEMBL	tr\|I1JNS6\|I1JNS6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G30860.1}

Sequence

Transcript Sequence

>Glyur000158s00011364.1
ATGCCACCCCTTCTAATGTCACTCCATGATCCTCTCTGCACCTTCCTCTTCCTCCTCTTCCTTTCTTCCACTCTCACAACAGTCACTCTCCAGGCACCGACACCCGTCTTTGCCCCAGTGTCAAAAGACAATTCTACCCAATTTTACACCCTCTCCATTTACCTCAAAACTCCTCCCCAACCCACCAAGCTCCACCTCCACCTCGGCTCCTCCTTCACCTGGCTCCTCTGCGACTCCTCCTCCTCCTCCTCCTCCCGCCACATCCCCTGCAACTCCTCCCTCTGCGCCTCCTTCCACTCCGGCGCTTGCTCCAACGACTCCTGCTCCCTCTTCCCCGAAAACCCCGTCACCAGAAACACCGTCCTCGGCACCGCACTCGCCGACTCCCTCGCCCTTCCCACCTCCACTCTCGGCCCAGGAGGCCCACTAGCTCTCGTTCCTAACTTCGTCTTCTCTTGCTCCACAGGCCCATTACTCCAAGGCCTAGCGNCCAATGCTACCGGTCTAGCCGCATTGGGCCGGTCCAACTACTCCCTCCCGGCCCAAATAAGCGCCGCCTTGTCCTCCCCTCGCATTTTCGCGCTCTGCTTGCCCAGTTCTTCTTCCTCCGCACCCGGCGCCGCTTTCTTCGGCTCCACCGGTCCTTACTATTTCTCTTCTTCCAATTCCCAAATTGACCTCTCCAAGTCACTTATTTACACCCCTCTCGTNGTGAACCCCGTTAGTGACACCGTCGTCACCTACGACAACGCACAACCGTCGGATGAGTATTTCGTGAACCTGACTTCCATCCGAATCAACGGCGTGGCTCTTCCCATCAACGCGTCGATCCTGACCGTTGATCAGAACGGCCTCGGTGGGACCAAGATCAGCACCGCGGATCCCTACACCGTTCTCGAAACTTCCATCTATAAACTCTTCGTTGAGCTGTTTGTGAACCAGTCGTCCGCTTTCAACTTGACGGTGACGGAAGCAGCCGTCGAGCCGTTTGGGGTGTGCTACCCTGCGGGAGACCTCACGGAGACGCGCGTCGGACCCGCTGTGCCGACCGTGGATCTCGTGATGCACAGCGAGGATGTGTTTTGGAGAGTGTTCGGGGGGAACTCGATGGTGAGGGTTGAAGAAAGGGAAGGAGGAGTGGATGTGTGGTGTTTGGGTTTTGTGGATGGTGGGACCCACAGGAGGACGCCCGTTGTGATTGGAGGGCACCAGTTGGAGGACAATCTCGTGCAGTTTGATGTGGATTCAAACAGATTCGGCTTCACCTCATCTCTGTTACTTCAGGCTACCACGTGTGCTAGTCTCGAGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00158	181258	182568	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function
GO:0004190 aspartic-type endopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000158s00011364.1	PF14543.1	TAXi_N	49	212	3.30E-35
Glyur000158s00011364.1	PF14541.1	TAXi_C	256	422	8.00E-49

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	122.858
SRR1783600	control	122.444
SRR1783602	moderate drought stress	72.623
SRR1811619	moderate drought stress	72.806

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.463
DRR006520	Root Summer glycyrrhizin high producing strain	25.626
DRR006521	Root Winter glycyrrhizin high producing strain	2.521
DRR006522	Root Winter glycyrrhizin high producing strain	2.291
DRR006523	Root Summer glycyrrhizin low producing strain	13.134
DRR006524	Root Summer glycyrrhizin low producing strain	11.520
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.133
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.909

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.566
SRR2868004	Drought Stress (root)	11.707
SRR2967015	Control (root)	12.011

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.833
SRR9715740	Leaf	1.553
SRR9715741	Leaf	2.156
SRR9715739	Root	84.782
SRR9715742	Root	36.892
SRR9715743	Root	43.456

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.492
SRR8749028	MeJA induced 9h	3.238
SRR8749029	MeJA induced 9h	2.889
SRR8749030	Uninduced	1.134
SRR8749031	Uninduced	0.641
SRR8749032	Uninduced	1.022

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	34.285
SRR8400027	Control - Root	45.768