Gene detail

Gene detail information of Glyur000158s00011360.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G48150.1	1.00E-70	glutathione peroxidase 4
NR	NP_001238132.1	7.62E-112	uncharacterized protein LOC100306136 [Glycine max]
COG	YP_005516832.1	1.00E-55	glutathione peroxidase [Alicyclobacillus acidocaldarius subsp. acidocaldarius Tc-4-1]
Swissprot	tr\|Q8L910\|GPX4_ARATH	5.00E-89	Probable glutathione peroxidase 4
trEMBL	tr\|C6SY48\|C6SY48_SOYBN	3.00E-112	Glutathione peroxidase {ECO:0000256\|RuleBase:RU000499}

Sequence

Transcript Sequence

>Glyur000158s00011360.1
CGTTGGTATTTTATCTTCTAAAATAACCGACTTGAATGACCAAAACGAAGAAAGTTGTCTGTATAATGAGTCTATCTGCCATCGCTGGACCACAAACTTAATGAAACAGAATTGGGATTGAGAAAGAAGGTAGTAGAAAATTTTCACAGACAGTGTGTGGAAGACCCAAATATTGGCATGGACATGGTCCTTCCCCTAAATTAGGAAAGAGAAGAGAGAGAGAGAGAGAGAGAGAGAAAATAGTAACAAGAGTGTTTACGTCTTCAAGGGGAAGCCAGGGAAAACTTATGGGTGCTTCACAATCGGTTTCAGAAAAATCCGTCCATGAATTCAAAGTCAAGGATGCAAAGGGTAGAGATGTGAGCCTCAGCACCTACAAGGGGAAAGTTCTTCTTATAGTTAACGTCGCTTCAAAATGTGGATTTACGAATTCCAATTACACCCAGTTAACTGAGCTTTACAGCAGATACAAGGACAGAGGTCTTGAGATACTGGCTTTTCCATGCAACCAGTTTTTGAAGCAAGAGCCTGGGTCTAGCCAGCAGGCAGAGGAATTTGCCTGTACAAGATTCAAGGCTGAGTATCCCATTTTTGGAAAGGTACGTGTTAATGGACCCGATACAGCACCTCTCTACAAATTCCTTAAGGAAAAGAAATCTGGATTTTTGGGGTCTAGGATAAAGTGGAACTTCACCAAGTTTTTGGTTGATAAGGAAGGGCATGTCCTCCAGCGTTATGGTCCAACCACCACACCATTGGCCATTGAAAATGACATCAANAAGGCATTGGGAGAGGCTTGAAAGGATCTACAATCATTTCAAATTACTGCGCGNGTCGAAGATAATTAAGATTAAATGAATGTATATTTAGTAGATTATGTTTCTTCTAGTGATGATTTGTTACATATTTCATGTCTAGTGTTGAAGATGATTAAGACAATGAATGTATATTTAGTAGATTATGTTTCTTCTTTTTTTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00158	160645	164540	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00432	gpx	EC:1.11.1.9	Arachidonic acid metabolism	map00590
			Glutathione metabolism	map00480
			Thyroid hormone synthesis	map04918

Gene Ontology

biological_process

GO:0006979 response to oxidative stress

GO:0055114 oxidation-reduction process

molecular_function
GO:0004602 glutathione peroxidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000158s00011360.1	PF00255.14	GSHPx	12	120	2.00E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	51.266
SRR1783600	control	51.263
SRR1783602	moderate drought stress	54.729
SRR1811619	moderate drought stress	55.501

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	40.622
DRR006520	Root Summer glycyrrhizin high producing strain	39.816
DRR006521	Root Winter glycyrrhizin high producing strain	75.114
DRR006522	Root Winter glycyrrhizin high producing strain	73.676
DRR006523	Root Summer glycyrrhizin low producing strain	62.717
DRR006524	Root Summer glycyrrhizin low producing strain	61.565
DRR006525	Leaf Summer glycyrrhizin high producing strain	35.027
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.691

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	57.743
SRR2868004	Drought Stress (root)	67.814
SRR2967015	Control (root)	61.143

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	43.991
SRR9715740	Leaf	60.046
SRR9715741	Leaf	54.992
SRR9715739	Root	16.846
SRR9715742	Root	36.946
SRR9715743	Root	31.494

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	26.616
SRR8749028	MeJA induced 9h	19.428
SRR8749029	MeJA induced 9h	17.156
SRR8749030	Uninduced	18.960
SRR8749031	Uninduced	13.497
SRR8749032	Uninduced	14.396

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	65.171
SRR8400027	Control - Root	65.597