Gene detail information of Glyur000158s00011355 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G23590.1 | 0 | REF4-related 1 |
| NR | XP_004493649.1 | 0 | PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Cicer arietinum] |
| Swissprot | tr|Q9LUG9|MD33A_ARATH | 0 | Mediator of RNA polymerase II transcription subunit 33A |
| trEMBL | tr|A0A072U3I8|A0A072U3I8_MEDTR | 0 | Mediator of RNA polymerase II transcription subunit 33A {ECO:0000313|EMBL:KEH23728.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00158 | 123240 | 131320 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.452 |
| SRR1783600 | control | 2.443 |
| SRR1783602 | moderate drought stress | 4.453 |
| SRR1811619 | moderate drought stress | 4.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.060 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.074 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.694 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.713 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.160 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.197 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.800 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.805 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.972 |
| SRR2868004 | Drought Stress (root) | 6.262 |
| SRR2967015 | Control (root) | 5.309 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.938 |
| SRR9715740 | Leaf | 1.194 |
| SRR9715741 | Leaf | 1.236 |
| SRR9715739 | Root | 1.182 |
| SRR9715742 | Root | 1.645 |
| SRR9715743 | Root | 1.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.898 |
| SRR8749028 | MeJA induced 9h | 2.617 |
| SRR8749029 | MeJA induced 9h | 1.260 |
| SRR8749030 | Uninduced | 1.191 |
| SRR8749031 | Uninduced | 0.798 |
| SRR8749032 | Uninduced | 0.603 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.048 |
| SRR8400027 | Control - Root | 3.985 |