Gene detail information of Glyur000158s00011352 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G03330.1 | 3.00E-47 | Small nuclear ribonucleoprotein family protein |
| NR | XP_003625831.1 | 6.82E-62 | SnRNP core Sm protein Sm-X5-like protein [Medicago truncatula] |
| Swissprot | tr|Q1H595|LSM2_ARATH | 2.00E-60 | Sm-like protein LSM2 {ECO:0000305} |
| trEMBL | tr|I3T5R8|I3T5R8_LOTJA | 3.00E-62 | Uncharacterized protein {ECO:0000313|EMBL:AFK47860.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00158 | 116270 | 119252 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000158s00011352.1 | PF01423.17 | LSM | 7 | 72 | 9.60E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 402.723 |
| SRR1783600 | control | 404.606 |
| SRR1783602 | moderate drought stress | 291.570 |
| SRR1811619 | moderate drought stress | 290.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 251.023 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 249.120 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 178.698 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 175.341 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 145.181 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 146.138 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 80.200 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 78.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 133.396 |
| SRR2868004 | Drought Stress (root) | 117.613 |
| SRR2967015 | Control (root) | 110.528 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 92.044 |
| SRR9715740 | Leaf | 95.780 |
| SRR9715741 | Leaf | 108.124 |
| SRR9715739 | Root | 148.123 |
| SRR9715742 | Root | 120.715 |
| SRR9715743 | Root | 124.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 146.121 |
| SRR8749028 | MeJA induced 9h | 69.074 |
| SRR8749029 | MeJA induced 9h | 148.261 |
| SRR8749030 | Uninduced | 60.735 |
| SRR8749031 | Uninduced | 40.334 |
| SRR8749032 | Uninduced | 63.534 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 154.028 |
| SRR8400027 | Control - Root | 140.150 |