Gene detail information of Glyur000158s00011351.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G06190.1 | 9.00E-174 | BTB-POZ and MATH domain 2 |
| NR | XP_004493645.1 | 0 | PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Cicer arietinum] |
| Swissprot | tr|Q9M8J9|BPM2_ARATH | 0 | BTB/POZ and MATH domain-containing protein 2 |
| trEMBL | tr|I1JNR6|I1JNR6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G30740.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00158 | 111052 | 115281 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
| Ubiquitin Family | 3-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000158s00011351.1 | PF00917.21 | MATH | 58 | 173 | 1.20E-10 |
| Glyur000158s00011351.1 | PF00651.26 | BTB | 199 | 316 | 9.50E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 37.623 |
| SRR1783600 | control | 38.915 |
| SRR1783602 | moderate drought stress | 39.565 |
| SRR1811619 | moderate drought stress | 40.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 64.909 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 63.992 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 43.012 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 41.461 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 64.762 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 64.293 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 34.205 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 34.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 65.774 |
| SRR2868004 | Drought Stress (root) | 67.278 |
| SRR2967015 | Control (root) | 65.719 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 67.984 |
| SRR9715740 | Leaf | 60.643 |
| SRR9715741 | Leaf | 79.113 |
| SRR9715739 | Root | 87.971 |
| SRR9715742 | Root | 73.555 |
| SRR9715743 | Root | 75.949 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 54.029 |
| SRR8749028 | MeJA induced 9h | 46.977 |
| SRR8749029 | MeJA induced 9h | 48.851 |
| SRR8749030 | Uninduced | 51.077 |
| SRR8749031 | Uninduced | 47.605 |
| SRR8749032 | Uninduced | 69.787 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 60.519 |
| SRR8400027 | Control - Root | 61.053 |