Gene detail

Gene detail information of Glyur000158s00011345

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02940.1	1.00E-139	oxidoreductase, 2OG-Fe(II) oxygenase family protein
NR	XP_007162387.1	0	hypothetical protein PHAVU_001G147800g [Phaseolus vulgaris]
trEMBL	tr\|V7CZP5\|V7CZP5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW34381.1}

Sequence

Transcript Sequence

>Glyur000158s00011345.1
ATGGCGGCTGTCCCAGCATCGCGGACCGATCCACCGAAAATGTCGTCGCCGCCGTTGCTAATTTCCGACTCCTTCGCNAAGGACGCCATTCTCGCCTGGTTCCGCGGCGAGTTTGCCGCCGCCAACGCCATCATCGACGCCCTCTGCGCCCACCTCGCCGCCGTCGCATCCTCCTCCGACGACTACGATTCCGCCTTCGCCGCCATCCACCGCCGCCGCCTCAACTGGATCCCCGTCATCCAGATGCAGAAGTACCACTCCATTGCCGACGTCACTCTCGAGCTTCGCAAAGTCGCCGAGAAGAAAACAGAGTCCGAAGAAGGAGCGACGAAAACAGCCGCCGAGAGCGGCGGCGATGAGAAACGGAAAGTGGAGGAGGAAGTGGTGGAAAGTGTTGGAAATGGCGGCGGCGAAGCTGCGGCGGGGGAGCCGCACGAGTATGATTCGCCGGACAGTGAGATCACTGATTCAGGGTCGCAGGAAATGCAACCCAGTTTTATGAACAATAATAATAGTATATGTTCCAATCATGAAGAATGTGAGGGGCGTTCTTCACAGATAAAGTTGACAAAAGGTTTTACGGCAAAGGAGTCCGTGAATGTTGTGAAAGGGTTAAAGTTGTATGAGGACATATTTTCTGAATCAGAAATCTGCAAGCTGACTGATTTTGTGAATGAGATCCATGCTGCTGGCCAGAACGGGGAACTTTCAGGTGAAACTTTTATACTATTTAACAAACAGATGAAGGGGAACAAGAGAGAGCTGATTCAGCTTGGTGTTCCAATATTTGGACAGATAAAAGACGACGCCAAAAGCAATATAGAGCCAATTCCAGCACTTCTCAGTGGTGTCATTGATCACCTTATTCAATGGCAATTAATTCCAGAGTACAAAAGGCCAAATGGTTGTATGATCAACTTTTTTGAAGAGGGGGAGTTTTCTCAGCCATTCTTGAAACCACCGCATTTGGATCAACCTCTATCCACCCTTCTTCTCTCTGAATCAACTATGGCTTTTGGGCGTATCCTTACTAGTGAAGATGATGGGAACTACAAGGGTCCACTCATGCTCTCATTGAAGAAGGGGTCTCTTTTAGTGATGAGAGGAAACAGCGTAGACATGGCAAGGCACGTAATGTGTCCATCCCCAAACAGAAGGGTGAGCATCNCCTTCTTTAGAGTGAGACAAGATTCCTATCAAAGCCAATCACCAACTCCTTCAATGACAACTGCGATGACTCTTTGGCAACCTGGCATTGCTAGCCCATTTGCTTTACCAAATGTAGCTCTAAGTGGCTATGAGGGTATGGCTATGATGCCCAAATGGGGAATTCTTGGTGCTCCAATGGTCATGCTAACCCCTATGCACCCTATGGCACTGAATCCCCGCAAGCTTCCTCGCGGTGGGACTGGGGTTTTCTTGCCTTGGAAGGGGCAATCCAGAAAACAGACTAGGCATCTTCCACCGCGTGCCCAAAAAGGACGGCTTATGGCATTACCTTCCCCGGTTGAATCACCCATGGGAGAGTCCACTTCTGAACCCAGCATTACTGTTGAAGGATAGGAATGATTTCAGTNTCGAAGCAGCCTTGGGTTTAAAGAAAATGTGAATCAAGAAAGGTGGCTTTCACGCCTCAGTTAGGCCCAGGTGCTGGCAGAAGAGTTAGTTTCATTCATTTTTTTCACCTTCTCCCTTTTAGTTGCTTTTAGAAAGATAAATAGAATCTAGTGTTCACAATAGTTTATTGCGGGTTCCAATCAGCTTAAGTNATTTGCAAAGTCTAGATTTCAAATTTTACGAAATGTGAATTATATCAGAGGGTAGAATTTTGTATGAATGGTCATTTATATTTTCATTTTAGACAAATCAAATTATCACGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00158	81236	86482	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.898
SRR1783600	control	15.269
SRR1783602	moderate drought stress	9.276
SRR1811619	moderate drought stress	9.355

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.286
DRR006520	Root Summer glycyrrhizin high producing strain	3.260
DRR006521	Root Winter glycyrrhizin high producing strain	1.129
DRR006522	Root Winter glycyrrhizin high producing strain	1.067
DRR006523	Root Summer glycyrrhizin low producing strain	4.818
DRR006524	Root Summer glycyrrhizin low producing strain	4.728
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.640
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.931

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.303
SRR2868004	Drought Stress (root)	7.668
SRR2967015	Control (root)	7.464

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.231
SRR9715740	Leaf	1.886
SRR9715741	Leaf	4.317
SRR9715739	Root	3.915
SRR9715742	Root	8.984
SRR9715743	Root	7.716

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.444
SRR8749028	MeJA induced 9h	0.568
SRR8749029	MeJA induced 9h	0.637
SRR8749030	Uninduced	1.927
SRR8749031	Uninduced	1.409
SRR8749032	Uninduced	0.840

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.192
SRR8400027	Control - Root	12.990