Gene detail

Gene detail information of Glyur000158s00011340

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G48030.1	1.00E-106	DNAse I-like superfamily protein
NR	KHN45385.1	0	hypothetical protein glysoja_028392 [Glycine soja]
COG	YP_005443664.1	1.00E-16	hypothetical protein CLDAP_37270 [Caldilinea aerophila DSM 14535 = NBRC 104270]
trEMBL	tr\|I1JNQ4\|I1JNQ4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G30600.1} (Fragment)

Sequence

Transcript Sequence

>Glyur000158s00011340.1
GACAAAAAAAGCTATAGCCACTAGTCCCCCCCAATATCACTATCATTTCATTTTCTTTCAAGCTCATAAAATCCATGCTGATCTCAAACAGAGAAGAGGCAGAGCCTACTCTGCCCCACACCCACCTCTCNGTCATGNTCAAACTCATCAACAATAACCTNCGTCGCCTCTGTTCCCACCTCCGGTGGCCAAAACGGCGCCGTTCCAAGCCCAAACAAATCATAAACAGGTTCGGAATAAAGCCCATCGCAAAACCTCAACCCGAACCAACCACCACCGAACCAGCCAATCCAAAAAAAACCATACGCATCGCAACCTTCAACGCTGCACTTTTCTCCATGGCACCAGCGGTTCCATTAACGGACGTCGACGAANCCGCCACCTTAAACGACAAAACAAACGACCGTCCAAGAAGCATTCTGAAGCAATGTTCTCCGTTACAGAACAAGAACAGCCTCAACGACAAGTCCAAGTTGAGGGTGTCTATAAACTTACCCGACAACGAGATTTCGCTGCTGCGGAACCGGCAAAGGAGCTTGAGCTTCTCGGAAGAGGAGAAGGAAGGGGGTTGGTGGCGGCAGAGGAGAAGAGCGGTGGTTGAAGTTCTGAGGGAGCTAAACGCTGACGTTTTGGGTTTGCAAGATGTGAAGGCGGAGGAAGAGAATGGAATGAAGCCTCTCTCTGATTTGGCTGGTGCTCTCGGGATGCACTATGTTTTCGCTGAAAGCTGGGCGCCACAATACGGCAACGCCGTTTTCTCCAAGTGGCCCATCAAACGCTGCACCGTTCAGAAAGTCTTTGACCACACGGATTTCAGGAATGTTTTGAAGGCCACCATCGATGTACCCCAAGTAGGTGAACTCAACTTTTACTGTACCCACCTTGATCATCTTGATGAGAATTGGAGGATGAAGCAGATAAATGCAATAATCCAGTCTAATGACGAGCCACACATCTTAGCTGGAGGTCTTAATTCACTCGATGAGTCAGATTACTCCCAAGAAAGATGGACAGATATTGTAAAGCCAACACCGAAGGTTGAAGTGATGAAATATCTCAAGAGTAGACACTACACGGATGCTAAGGAATTTGCAGGGGAATGTGTCCAAGGGACATGTAAGTATGGAACTCGGGTNGATTACATATTATCTTCCTCAGATTCTCCATATAAATTCGTTCCAGGGTCCTATTTAGTCCTTTCTTCCAAAGGGACTTCAGATCATCACATAGTAAAAGTTGATGTTGTAAAAGTAAATAGCAACCCTCAAGAAAATTATCTGACAAAAAAGCATCGACAACCAAGACAGAGGTTGTAAGAGTAGCGTATGGATAACACACACTGGAGATATAGATTGAATTCTTTTCTTTCCTCCTCTCAGTTGAGATTAATTTGATTGTATTACGGAGATGGGGTAGTTGGTTTGGTTACTGCATAATCCAGCTTCCTAATCCTCAGTTCTGTATAGTGTTCTTCAAAAGATTTAGAATAGTATGAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00158	65384	67806	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000158s00011340.1	PF03372.18	Exo_endo_phos	167	383	2.80E-19

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.315
SRR1783600	control	1.344
SRR1783602	moderate drought stress	7.933
SRR1811619	moderate drought stress	7.774

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.078
DRR006520	Root Summer glycyrrhizin high producing strain	1.933
DRR006521	Root Winter glycyrrhizin high producing strain	0.730
DRR006522	Root Winter glycyrrhizin high producing strain	0.871
DRR006523	Root Summer glycyrrhizin low producing strain	1.726
DRR006524	Root Summer glycyrrhizin low producing strain	1.705
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.702
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.670

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.094
SRR2868004	Drought Stress (root)	12.824
SRR2967015	Control (root)	8.179

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	12.492
SRR9715740	Leaf	16.421
SRR9715741	Leaf	18.628
SRR9715739	Root	2.659
SRR9715742	Root	4.503
SRR9715743	Root	3.833

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.064
SRR8749028	MeJA induced 9h	1.422
SRR8749029	MeJA induced 9h	2.172
SRR8749030	Uninduced	0.765
SRR8749031	Uninduced	1.388
SRR8749032	Uninduced	3.838

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.198
SRR8400027	Control - Root	2.641