Gene detail information of Glyur000158s00011338 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13320.1 | 9.00E-81 | Auxin-responsive GH3 family protein |
| NR | XP_003521227.1 | 0 | PREDICTED: probable indole-3-acetic acid-amido synthetase GH3.6-like [Glycine max] |
| COG | YP_003444757.1 | 1.00E-11 | alpha-L-glutamate ligase [Allochromatium vinosum DSM 180] |
| Swissprot | tr|Q60EY1|GH36_ORYSJ | 6.00E-120 | Probable indole-3-acetic acid-amido synthetase GH3.6 |
| trEMBL | tr|I1JNQ3|I1JNQ3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G30590.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00158 | 60978 | 63760 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000158s00011338.1 | PF03321.8 | GH3 | 90 | 528 | 3.00E-93 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.545 |
| SRR1783600 | control | 11.642 |
| SRR1783602 | moderate drought stress | 6.731 |
| SRR1811619 | moderate drought stress | 6.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.804 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.581 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 19.610 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 18.421 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.125 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.181 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.442 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.454 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.967 |
| SRR2868004 | Drought Stress (root) | 30.678 |
| SRR2967015 | Control (root) | 30.871 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.855 |
| SRR9715740 | Leaf | 4.689 |
| SRR9715741 | Leaf | 7.757 |
| SRR9715739 | Root | 3.229 |
| SRR9715742 | Root | 8.582 |
| SRR9715743 | Root | 8.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.592 |
| SRR8749028 | MeJA induced 9h | 20.095 |
| SRR8749029 | MeJA induced 9h | 15.500 |
| SRR8749030 | Uninduced | 17.951 |
| SRR8749031 | Uninduced | 17.002 |
| SRR8749032 | Uninduced | 15.893 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.617 |
| SRR8400027 | Control - Root | 9.754 |