Gene detail

Gene detail information of Glyur000158s00011336

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G48020.2	2.00E-163	Major facilitator superfamily protein
NR	KEH23691.1	0	sugar porter (SP) family MFS transporter [Medicago truncatula]
COG	YP_004670832.1	1.00E-62	putative metabolite transport protein ywtG [Simkania negevensis Z]
Swissprot	tr\|P93051\|ERDL7_ARATH	0	Sugar transporter ERD6-like 7
trEMBL	tr\|A0A072U2R3\|A0A072U2R3_MEDTR	0	Sugar porter (SP) family MFS transporter {ECO:0000313\|EMBL:KEH23691.1}

Sequence

Transcript Sequence

>Glyur000158s00011336.1
ATAAAATTCATTCACTTTTATCCCTGGTGGTTTACAATAGGAAAAAAATAAAAATAATAATAATTTCCTTTCCTTCCATGACACAAGCAGCATGTTTACTTGCATTTCTCTGCTTTGTCCTACTCCTGTCCTATATACACAGCATCACAGTCACCAAGGAACTAATTAGGATTATACTACACACACAAGGAAGGAAGGAAGGAAGGAGTGAAACATGGCAATCAAAGAGGATGTGGAGCAGAAAGGAATCAGAGAACCATTGGTGGGGGAACACAACAACCAGCACCAGCTGGTACATGAAAGCCATGGCCATCATCATCCATGGATGGTTTACTTCACTACATTCATTGCTGTCTGTGGTTCTTATGAATTTGGGGCTTGTGCTGGATATTCATCTCCAACTCAAGATGCTATCAGGAAGGATCTCAGTCTGACTTTGGCAGAGTACTCCTTGTTTGGCTCCATCTTGACTTTTGGTGCGATGATTGGTGCAATAACAAGTGGGCCTATTGCTGATTTTATTGGACGAAAGGGGGCAATGAGAGTGTCAAGTGCTTTCTGCATCGCAGGGTGGATTGCTATTTACTTTTCTGAGGGTCCAGTTCCTCTGGACATTGGGAGGCTAGCAACAGGATATGGAATGGGAGTTTTTTCATATGTGGTTCCTGTCTTCGTAGCAGAAATTGCACCAAAAGAACTCCGAGGGGCACTGACTACCTTAAATCAGTTCATGATTGTTTGTGCTGTGTCTGTGTCATTCATAATCGGAACAGTACTTTCATGGAGGGCTTTAGCCATAATCGGCCTCATTCCCACTGCTGTATTGCTTTTGGGTCTGTTCTTCATTCCGGAGTCTCCTAGATGGCTGGCAAAGAGAGGACGCGCAAAAGACTTTGAGGCAGCGCTGCAGATACTTCGTGGCAAAGATGCTGATATATCTCAAGAGGCAGATGAAATTCAGGATTATATAACTACTTTAGATCGGCTCCCAAAACCCAAGCTGCTGGATTTGTTTCAAAGAAGATATTTGCGCTCAGTCACTATTGGAGTAGGGCTTATGGTCTGCCAGCAATTTGGGGGAATCAATGGAGTTTGCTTTTATACTAGCAGTATTTTTGAGCTAGCAGGATTTTCTTCCACCATTGGGACTATAATATATGCTTGCCTTCAGGTTGTGATCACAGGTGTTGGAGCAGCCCTCATAGATAAAGCGGGCAGGAAGCCCCTACTACTGGTATCTGGATCAGGATTGGTTGCAGGATGTTTATTTACAGCAGTTGCATTCTATCTCAAGGTTCATGATGTGGGTGTGGGGGCAGTCCCAGCACTTGCTCTAACTGGCATACTTATATTTCCTGTCAATATTAAAGGGCGGGCAGGAAGCATAGCCACATTGGTGAACTGGTTTGGTGCATGGTTATGTTCCTATACTTTCAACTTTCTCATGAGCTGGAGCTCCTATGGCACCTTCCTTCTTTATGCTGCAATCAATGCACTAGCTATATTATTTATAGTTGTAGTGGTTCCAGAAACCAAAGGTAAAAGCCTGGAACAATTACAAGCAGCAATTAATGCGTAGGAAGCAGGAGTTTTGCGATTTGCAGTGTGGTGGAGTGGAACAAAAGAGGACACTAGTTGATGATTAAATCATTAGCCATATTTTTTCTTTATAGTCTATTTGCTTCTATATTGATGATTGAATTCTTTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00158	43839	60717	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055085 transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0005215 transporter activity

GO:0022857 transmembrane transporter activity

GO:0022891 substrate-specific transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000158s00011336.1	PF00083.19	Sugar_tr	49	450	2.50E-76

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.532
SRR1783600	control	7.508
SRR1783602	moderate drought stress	5.764
SRR1811619	moderate drought stress	5.671

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.454
DRR006520	Root Summer glycyrrhizin high producing strain	9.366
DRR006521	Root Winter glycyrrhizin high producing strain	3.601
DRR006522	Root Winter glycyrrhizin high producing strain	3.625
DRR006523	Root Summer glycyrrhizin low producing strain	10.205
DRR006524	Root Summer glycyrrhizin low producing strain	9.876
DRR006525	Leaf Summer glycyrrhizin high producing strain	27.698
DRR006526	Leaf Summer glycyrrhizin high producing strain	27.046

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.264
SRR2868004	Drought Stress (root)	8.088
SRR2967015	Control (root)	7.470

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.880
SRR9715740	Leaf	24.159
SRR9715741	Leaf	24.553
SRR9715739	Root	9.030
SRR9715742	Root	7.859
SRR9715743	Root	9.031

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.276
SRR8749028	MeJA induced 9h	0.096
SRR8749029	MeJA induced 9h	0.156
SRR8749030	Uninduced	0.155
SRR8749031	Uninduced	0.117
SRR8749032	Uninduced	0.066

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.505
SRR8400027	Control - Root	16.698