Gene detail

Gene detail information of Glyur000158s00011334

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G48010.1	3.00E-137	receptor-like kinase in in flowers 3
NR	XP_004493631.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3-like [Cicer arietinum]
COG	YP_001958461.1	2.00E-14	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|P93050\|RKF3_ARATH	2.00E-171	Probable LRR receptor-like serine/threonine-protein kinase RKF3 (Precursor)
trEMBL	tr\|A0A072U3F3\|A0A072U3F3_MEDTR	0	LRR receptor-like Serine/Threonine-kinase RKF3, putative {ECO:0000313\|EMBL:KEH23688.1}

Sequence

Transcript Sequence

>Glyur000158s00011334.1
ATGTCCCTCCTCTGCTACCACCTCATCCCTCTATTCTTTCTCCTCTTCTTCACTTTTCCCACTCCTTCCCTCTCCGCCACATGCCCCCTAAACATAACCGTCCTCCGCGTCGTTGGCGGCGGTTCAAGACCCTCCTTCGACTCCAACACACAGTGCCACTACATCCTCCAAGCCCTCCACCTCCTCCAAGCCGACCTCCTCCGCCGAACCGGCCTCTTCGTTCCCCCACTTAACTCCTCCGAACCATGCTGGTCCTCCTTCCAGTCCTTCATCAACGAATTCGAACCTAACTTCGATATCCGAACCTCCTGCGGCTTCCAAACCTCTTGGATCTCCTACGGTTGCATGAACTTCACCACCAAAACCGAATTCGAAAACCAAGTCTCCCAAGCCGCACTCGAATCCGTTCACCAAAACTGTAACCAATCACTAGATAACAACGCACCCTGTGCACTCTGCACCACGAAACTCTCCAACTTGCTCTCTTACCTCACCGGTCCCACCGTCGGTAACGTCTCCGATTGCCGGTCATATACTTCTATCTACGCCGCTTCTCTCTCCGATCAGTTTGGCCCCACTGACCCCGGAACCGCCAAGTGCCTCTTCGGCCTCGATTTTAGCTCCTCCGGTTCAACTGGTAAGCATCGAACCCTCGTTATTGTGCTTGTTTCCGTTTTCGTCGTGTTGGGCTTGTTCATTGGTGGATTTTGCGTTTGGTTTAGATATAAGCGGAAGAGGATTGAAAGAAAAAAGGGTAAAAATGGTAACACTGAGATGGATCTTGTTGTTTCTGGATTGGATTCGATGAACCAGAGTACCACTTTGATTAGGTTCACCTTTGATGAAGTTAAGAAGGCTACTAGGAATTTCTCTAGGGATAACATAGTTGGGAGTGGGGGTTATGGGAATGTTTATAGAGGGTTGTTATCCGATGGAACTCAAGTTGCTTTAAAAAGGTTCAAGAATTGTTCGGTTGCTGGGGATGCTAGCTTCACTCATGAAGTGGAGGTGATTGCGAGTGTTAGGCATGTGAACCTTGTTACCCTTAGAGGGTATTGTACTGCCACGACTAATTTAGAGGGTCACCAGAGGATTATTGTTACTGATTTGATGGAGAATGGGAGTCTCTATGATCATTTGTTTGGTTCTGCGAAGAAGAAACTCAGCTGGCCGATTCGTCAGAAGGTTGCTCTTGGCACTGCTAGGGGTTTGGCCTATTTGCATTATGGGGCTCAACCTTCTATCATCCATAGGGACATTAAGGCCAGTAACATACTTCTTGATGAGAAGTTTGAGGCAAAAGTAGCGGATTTCGGGCTGGCNAAGGCTTTGGATGTTATAGAGGATGGTATGCCGGAACCCGGTGCGCCGGAGGTTCTTGAGAAGTATGTGTTGGTTGCTGTGCTGTGTTCTCATCCACAGCTATATGCTAGGCCAACAATGGATCAGGTTGTTAAGATGCTGGAGACNGATGATGAATCAGTGCCCTCGGTGGTGGAAAGGCCAATCCCTTTCATTGCTGGGAGGATTGATATTGAGAGATCTGTGGGCAATGACTCGGGTCAGCTCTGCAGTCCAACTGGGTATCGAGCATATACAATGAAGTCACAAAGTAACCGTCCTTCTAATTGTAGTAAGGAAGAAGAGGAAGGAAGCTCGGGACTCGGGGCTGTATCAAAAAGAAAAATGAAGGGCAAGGTGGATTCCCCTGTTGGTGTTCTTGAGGACTATTTCAAGAGCTCAGAGTCAGAAACAAGTTCTTCCAAAGAACACACTATGGATGATTCTGAGTCAAACTCAAAACCTGGTTCTAGTTCTAGGTGGCATGCATTTCTCCAATTGTTGAGAACCAGAACAAAGAAACCCATATCCACATTGCATCCTCTCAGTGGCTTCAAGCTCTCAAGAAGAATGAGTTGTAGCATGAGAGAAACTATACTTCCAAGTTGTAGCATAGCTGTAGATTCGTCCTTGAACAGGTCATCACCATGGAAGATCTTTACCCACCATGAGATACAAATTGCAACCAATTATTTTAGCCAAGGGTGTTTGGAAAATCGTCAGCTAGTAGCGATTAAGCGTCTAACAAGAGGAACAGCTGAAGAAACCATAGGGGACTTCTTATCAGAACTCGGCATAATGGCGCATGTAAACCATCCCAATACTGCTAAGTTGGTTGGCTATGGGGTGGAAGGAGGAATGCACTTAGTGCTTGAATTGTCTGAGAAAGGAAGCCTAGCTTCTATTTGTGATTTCGGGCTAGCAAAATGGCTACCGGAGAATTGGACTCATCACACCGTTTCAAAATTTGAAGGAACTTTTGGCTACCTTGCTCCGGAATACTTGCTTCATGGGATAGTAGACGAGAAAACGGATGTATTTGCCTTTGTCGGCAGATTAATACTATGCTCCTCACAGCTTCTCTATGCATTCAACAATCCTCAATTCGTCATTGTACAGCTTCTGAATGGTAACCTTAGCTGCTTCAAGTTCACGAAGAAATCTAGATTTCCATTCTTTGAAAAAGTCTTTCAAGAAGAGCTCCTTGATTCTGATTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00158	18865	28806	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.6.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000158s00011334.1	PF00069.20	Pkinase	293	444	4.10E-31
Glyur000158s00011334.1	PF07714.12	Pkinase_Tyr	685	748	5.50E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.462
SRR1783600	control	5.391
SRR1783602	moderate drought stress	5.347
SRR1811619	moderate drought stress	5.416

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.563
DRR006520	Root Summer glycyrrhizin high producing strain	8.146
DRR006521	Root Winter glycyrrhizin high producing strain	3.273
DRR006522	Root Winter glycyrrhizin high producing strain	3.094
DRR006523	Root Summer glycyrrhizin low producing strain	12.126
DRR006524	Root Summer glycyrrhizin low producing strain	12.803
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.400
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.426

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	19.379
SRR2868004	Drought Stress (root)	27.573
SRR2967015	Control (root)	24.646

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.597
SRR9715740	Leaf	9.318
SRR9715741	Leaf	12.027
SRR9715739	Root	13.748
SRR9715742	Root	16.491
SRR9715743	Root	15.644

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.428
SRR8749028	MeJA induced 9h	7.874
SRR8749029	MeJA induced 9h	3.109
SRR8749030	Uninduced	8.086
SRR8749031	Uninduced	10.220
SRR8749032	Uninduced	5.189

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.893
SRR8400027	Control - Root	15.521