Gene detail

Gene detail information of Glyur000158s00011333

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G03010.1	1.00E-151	RNI-like superfamily protein
NR	XP_004493629.1	0	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Cicer arietinum]
COG	YP_001192956.1	4.00E-31	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|Q00874\|DR100_ARATH	5.00E-39	DNA-damage-repair/toleration protein DRT100 (Precursor)
trEMBL	tr\|A0A072U2P5\|A0A072U2P5_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:KEH23681.1}

Sequence

Transcript Sequence

>Glyur000158s00011333.1
ATGGACATTGCTACTGCTACTACCTGTTCTCTGTTTCTCTTATGCTGTTTCCTTCAATCCACAAGAGCCATGTTGAACCCCATTGATTTCTTGGCCCTTCAATCAATTCGNAGGGCGCTGCACGACGTTCCCGGTTCCAATTTCTTCGCTTCTTGGGATTTCACCGCCGACCCTTGCAACTTCGCCGGCGTTTATTGTTCCTCCGACAGGGTCGTTGCCCTCAATCTCGGCGAACCCAGGGCCGGTTCGCCCGGACTCACCGGAAAACTAGACCCCGCCGTNGGCAAGCTCTCTGCTCTNGCCGAATTCACCGTCGTTCATGGCCGGGTTTACGGCCCTCTTCCCCAGTCCCTTTCCCAATTGAAGAACCTCCGGTTCCTCGGCATCAGCCGGAACTTCATCTCCGGCGAGATTCCGGCTAGTCTGTCCCAGCTCCGGCACCTACGAACCATCGATCTCAGCTACAACCAGCTCGCCGGAGCCATTCCTCCGTCCATCGGAACTTTGCCGGAGCTAACCAACCTGATCCTCGNCCATAACCGCCTTTCCGGTTCGGTTCCTTCGTTCGCTTCGGCTCGGTCCCTGACTCGACTCGACCTCAAGCACAACTCTCTCTCNGGTTCGCTATCTCCCGGTTCTCTCCCTAACTCCCTCCGGTACCTCTCTCTTTCCTGGAACCAGCTGACCGGACCGGTGGACAAGGTCTTAAACCGGCTAAACAAGCTCAACTACCTTGACCTCAGCCTGAACCGGTTCACCGGTCCAGTCCCGGCTCAGCTGTTCTCTTTCCCGCTTACAAACCTGCAACTAGAAAGGAANCAGTTCTGCGGTCCGGTCGAACCGGTTAATGAAGTCACGATCCAAACCGTTGATCTCAGCTACAACCGGCTCTCGGGGGAAATATCACCGTTGCTAGCGAGCGTGCAAAACCTGTACCTGAACAATAACGGGTTCACGGGTCAGGTTCCGGGTAGTTTCGTGGAGCGGTTATTGGCGTCGAGTATACAGATACTGTATCTTCAGCACAATTACCTCACCGGAATCGCCATAAGCCCGACGGCGGAGATTCCGGTGAGCAGTTCCCTGTGCCTGCAGTATAATTGCATGGTGCCGCCCNTTCAGATGACGTGTCCCTTCAAAGCTGGGTACCAAAAAACCAGGCCTGCTCAGCAGTGCAACCGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00158	14044	15228	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000158s00011333.1	PF08263.7	LRRNT_2	29	67	2.90E-08
Glyur000158s00011333.1	PF12799.2	LRR_4	122	158	9.80E-08
Glyur000158s00011333.1	PF13855.1	LRR_8	170	228	5.80E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.808
SRR1783600	control	0.808
SRR1783602	moderate drought stress	0.150
SRR1811619	moderate drought stress	0.096

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.553
DRR006520	Root Summer glycyrrhizin high producing strain	1.372
DRR006521	Root Winter glycyrrhizin high producing strain	0.168
DRR006522	Root Winter glycyrrhizin high producing strain	0.183
DRR006523	Root Summer glycyrrhizin low producing strain	0.852
DRR006524	Root Summer glycyrrhizin low producing strain	1.008
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.321
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.586

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.004
SRR2868004	Drought Stress (root)	1.616
SRR2967015	Control (root)	1.160

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.784
SRR9715740	Leaf	7.299
SRR9715741	Leaf	6.164
SRR9715739	Root	0.759
SRR9715742	Root	1.102
SRR9715743	Root	1.213

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.090
SRR8749028	MeJA induced 9h	1.736
SRR8749029	MeJA induced 9h	1.457
SRR8749030	Uninduced	0.491
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.218

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.670
SRR8400027	Control - Root	0.539