Gene detail

Gene detail information of Glyur000158s00011331.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G63010.1	8.00E-137	alpha/beta-Hydrolases superfamily protein
NR	XP_003625327.1	0	hypothetical protein MTR_7g093950 [Medicago truncatula]
COG	YP_006671133.1	4.00E-25	putative 6-hexanolide hydrolase [Gordonia sp. KTR9]
Swissprot	tr\|Q9LYC1\|GID1B_ARATH	0	Gibberellin receptor GID1B
trEMBL	tr\|G7KWD5\|G7KWD5_MEDTR	0	Gibberellin receptor GID1c-like protein {ECO:0000313\|EMBL:AES81545.1}

Sequence

Transcript Sequence

>Glyur000158s00011331.1
GTGGGACCCAAATAAACAGTTTAATTCGGCCGCCCGCTTTGTCGTCTCTCTCGTCTCCGTCCATTCCCGTCGTTCCTTTGCGTTTGACTCTCTTCCCCTTCCCCTTTCTCTCTCTCTCTCTGTTTATTCTGCACCTTCTTATCCCTCTCTCTGCTTTCTGTGATCTCTCTGAGCTCCCCCTGTTCCTCTTTTGTTTCATATACGAGAGTGTACCTTCTTCTTCTTCTTCTTCTCCTTCACCGAAACCTTCAATCAATTCAATAGTGTTTCCCACAGGCACCAACCCAGGAGAGTCATACGTACGCACCTACGTTTACGTACACAAGCACTTACTTATATACACAACATACCCTTTTATTATCTCAAACCACATCAAGGCCTTCTCTACCCTCTTCTGATTGCTGCTCTGCTATTATGAGGCGGCACAAGAGAGGGTGGTTACCGTGAGGATCACTGTTTCTTCTTCTTAGACCTTTTTTCTGTTTGGTTCCCCCTTCCAATACTATAGAGAGAGAGAGAGAGAGAGAGAGAACGAGACATCATGGCTGGCAGTAATGAAGTCAACCTCAATGAATCTAGGAGTGTTGTTCCACTCAATACATGGGTGCTAATCTCCAATTTCAAGCTTGCCTACAGTCTTCTCAGACGCGCAGATGGAACATTCAACAGAGAGTTAGAAGAGTTCCTTGACAGGAAAGTCCCAGCCAATGCGATTCCCGTTGATGGGGTCTTATCCTTTGATCACGTGGATCGAAACAGTGGCCTCTTCAACCGTGTNTACCTTCCATCATCCCTTCGTGAAGAAAACGAGGCTCAATGGAGCATCAAGGATCTAGAGATTCCCCTGAGCACAACAGAGATTGTCCCTGTCATAATATTCTTCCACGGTGGAAGCTTCTCTCATTCCTCAGCAAACAGTGCTATCTATGACACCTTCTGCCGCCGCCTAGTCAGCAACTGCAGCGCCGCGGTGGTGTCCGTGAACTACCGGAAATCGCCGGAGCATCGCTACCCGTGTGCCTATGAGGATGGATGGGCTGCACTCAAGTGGGTGAAGTCAAGGAAGTGGCTGCAAAGTGGGAAGGAATCAAAGGTTTATGTGTACATGGCTGGGGACAGTTCTGGAGGGAACATTGTCCACCATGTTGCGGCGAGGGCCGCGGCCNCGGTGGAGGAGGAGGAAGAGGGAGAGAAAATTGAGGTTCTTGGGAATATCCTTCTTCATCCTTTGTTTGGTGGGGAGAAGAGAACTGAGTCAGAGATGAGGTTGGATGGGAAGTACTTTGTGAGGGTGCAAGAGCGTGATTGGTATTGGAGGGCTTTTCTACCTGANGGAGAGGATAGAGACCACCCTGCTTGTAACCCATTTGGTCCTAAAGGGAAAAGCCTTGTAGGGATTAAGTTCCCCAAAAGTCTTGTATGTGTGGCTGGCTTGGATCTTCTCCAAGATTGGCAATTGGCATATGTGGAAGGTCTTCAGAATTCTGGTCAACAGGTCAAACTCCTTTTCCTTAAGGAGGCCACTATTGGTTTCTACTTCTTGCCTAATAATGACCATTTCTATTGCCTCATGGAGGAGATCAAGAACTTCGTGCATTCTAACTGTTAATATACCACTACCACTACCACTTCTTAACCTTACCTATAGCAGGCCATACATAACAAAAGCTTGACTTTTCACTTGGGTTCCTTTTCTTTTCTTTTTTTCTCTTTTCCTACTTTGTAGTAATGGTGTGTACTTATAAAATTATGTAGCATTATTACTTCTTAATTTGATAACATCTATGGTGGTCAATTTGAGAGTTCTGTGACCTGTGGACTACTGCTTCCAGTTCTCTTTGGCTCTATGCTCATGTCTTTTGAAGGGTAGCACCGGTTTCAGCAGCTTGAAGTGAAGTACCAGAACTCAGTTCATTTGTGGGGTTTGGAGGAACCACCTTATACAAAAATTTTAGTACCCCATTTTAACTTTTTGACCTGAATAGCAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00158	495	3058	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14493	GID1	EC:3.-.-.-	Plant hormone signal transduction	map04075

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000158s00011331.1	PF07859.8	Abhydrolase_3	111	332	6.00E-56

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.938
SRR1783600	control	34.922
SRR1783602	moderate drought stress	33.800
SRR1811619	moderate drought stress	34.123

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	21.173
DRR006520	Root Summer glycyrrhizin high producing strain	20.901
DRR006521	Root Winter glycyrrhizin high producing strain	158.886
DRR006522	Root Winter glycyrrhizin high producing strain	154.009
DRR006523	Root Summer glycyrrhizin low producing strain	56.909
DRR006524	Root Summer glycyrrhizin low producing strain	57.774
DRR006525	Leaf Summer glycyrrhizin high producing strain	36.362
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.099

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	72.329
SRR2868004	Drought Stress (root)	117.872
SRR2967015	Control (root)	138.494

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.229
SRR9715740	Leaf	53.018
SRR9715741	Leaf	44.163
SRR9715739	Root	85.848
SRR9715742	Root	63.434
SRR9715743	Root	62.283

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	51.047
SRR8749028	MeJA induced 9h	76.957
SRR8749029	MeJA induced 9h	55.293
SRR8749030	Uninduced	26.103
SRR8749031	Uninduced	19.657
SRR8749032	Uninduced	26.188

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	56.946
SRR8400027	Control - Root	33.569