Gene detail information of Glyur000157s00015852 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G36930.2 | 1.00E-38 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | NP_001239789.1 | 8.07E-119 | uncharacterized protein LOC100500254 [Glycine max] |
| Swissprot | tr|Q40392|TMVRN_NICGU | 1.00E-45 | TMV resistance protein N |
| trEMBL | tr|C6ZS33|C6ZS33_SOYBN | 3.00E-119 | TIR-NBS disease resistance-like protein {ECO:0000313|EMBL:ACM89627.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00157 | 277889 | 282034 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000157s00015852.1 | PF01582.15 | TIR | 95 | 224 | 2.10E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.645 |
| SRR1783600 | control | 0.607 |
| SRR1783602 | moderate drought stress | 0.703 |
| SRR1811619 | moderate drought stress | 0.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.442 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.426 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.243 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.250 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.893 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.835 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.214 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.292 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 86.641 |
| SRR2868004 | Drought Stress (root) | 122.219 |
| SRR2967015 | Control (root) | 108.984 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.749 |
| SRR9715740 | Leaf | 4.161 |
| SRR9715741 | Leaf | 6.153 |
| SRR9715739 | Root | 0.817 |
| SRR9715742 | Root | 0.403 |
| SRR9715743 | Root | 0.488 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 55.317 |
| SRR8749028 | MeJA induced 9h | 54.595 |
| SRR8749029 | MeJA induced 9h | 73.902 |
| SRR8749030 | Uninduced | 24.027 |
| SRR8749031 | Uninduced | 21.694 |
| SRR8749032 | Uninduced | 9.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.211 |
| SRR8400027 | Control - Root | 17.345 |