Gene detail information of Glyur000157s00015851 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02590.1 | 7.00E-73 | |
| NR | XP_007157578.1 | 9.26E-175 | hypothetical protein PHAVU_002G080900g [Phaseolus vulgaris] |
| COG | YP_003758331.1 | 3.00E-31 | putative small multi-drug export [Dehalogenimonas lykanthroporepellens BL-DC-9] |
| trEMBL | tr|V7CH90|V7CH90_PHAVU | 3.00E-175 | Uncharacterized protein {ECO:0000313|EMBL:ESW29572.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00157 | 274501 | 276402 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000157s00015851.1 | PF06695.6 | Sm_multidrug_ex | 152 | 273 | 9.40E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.116 |
| SRR1783600 | control | 3.089 |
| SRR1783602 | moderate drought stress | 2.659 |
| SRR1811619 | moderate drought stress | 2.572 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.657 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.737 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.326 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.318 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.675 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.047 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.182 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.782 |
| SRR2868004 | Drought Stress (root) | 1.800 |
| SRR2967015 | Control (root) | 3.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.008 |
| SRR9715740 | Leaf | 9.846 |
| SRR9715741 | Leaf | 8.102 |
| SRR9715739 | Root | 5.450 |
| SRR9715742 | Root | 3.370 |
| SRR9715743 | Root | 3.999 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.879 |
| SRR8749028 | MeJA induced 9h | 1.583 |
| SRR8749029 | MeJA induced 9h | 1.322 |
| SRR8749030 | Uninduced | 0.532 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.648 |
| SRR8400027 | Control - Root | 5.823 |