Gene detail

Gene detail information of Glyur000157s00015844

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10380.1	1.00E-78	Putative membrane lipoprotein
NR	XP_003613494.1	0	Wall-associated receptor kinase-like protein [Medicago truncatula]
Swissprot	tr\|Q9LZM4\|WAKLQ_ARATH	1.00E-08	Wall-associated receptor kinase-like 20 (Precursor)
trEMBL	tr\|G7K8A0\|G7K8A0_MEDTR	0	Wall-associated receptor kinase galacturonan-binding protein {ECO:0000313\|EMBL:AES96452.1}

Sequence

Transcript Sequence

>Glyur000157s00015844.1
CATTAAACAAATCCTAATATAACAAAAATGCAAGTTCCTTATTGCTTCCATTTTATTTTAACTTCAAAAAGGAATTACTCATCTGCTACCAGCTAGCTATAGAGGCTTTAAACAATTCAATAAATAGTAATACCAGCAGCANCAAACCTATTAGCTTGTCCCTCCACAATATCATCTTGCTTTATCTCTTTCCTTGTCCTCCCTCAAGCCTCTCTCAATTACAACAATGGAGTTCATCCATCCTTCAGTTCCTCTCCTCCCCATTTTCCTTTTCCTACTTCCTTCTCTAATCCTTGCTCAAGTCTGCCAGAGAAACTGTGGCAAAGAAACTCTCAAGTACCCATTTGGCAGTGGCCCTGGTTGCGGTGACCCTCGCTTCCAACCACATGTGAGTTGTNGCCAACAAAGGCTCACCTTCACAACTCACACAGGCTCCTACCTTGTTACCTCAATTGACTATACCAATCAAGTCATATACATCTCAGATCCCACCATGTCAACATGCTCTTGTACTCTACCTAGTAAAGGCTTTGGCCTAGACTGGGATGCCCCTTTCACTTTTCATGATAGTACCATCTTTGCTCTAGTAGACTGTTCAATGAACTCATCATCAATATGCAAATCAAGAAGCTATGATGATGGAAGCAATTCTAGGCTTCAATGTGATCAGGGTACCCCAGTTTGTGATCTTCTATATTCATGCAGGCCTATTAGTACTATCAACCTACCAATCTCAACATGTTGTGTTTACACCCCAGTCAATCTTGGTCCATCCTTTGATATGGATCTGCAGAAGCTCCAATGCTCTTCATATACAGGGTTTTACAACTACAATGATCAACAAACTGATCCTGAAAAGTGGAACTATGGAATAGCACTCAAGTACAAGTTCAGTGTCACAAATGACTATCCCAGCTCATGTGCTGCATGTGAAAGGAGCTATGGAGTCTGTGGGTACAATGGACAATATAATTCATTCATCTGCAACTGTCCTAATGGGATTAACACCACAACAGATTGTTTCTTCACATCATCTTATAACAATGGTTTTCGAAATGCAATATTGAGTTTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00157	238081	239918	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0030247 polysaccharide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000157s00015844.1	PF13947.1	GUB_WAK_bind	26	124	1.20E-13
Glyur000157s00015844.1	PF14380.1	WAK_assoc	205	258	5.90E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.197
SRR1783600	control	9.222
SRR1783602	moderate drought stress	5.417
SRR1811619	moderate drought stress	5.419

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.001
DRR006520	Root Summer glycyrrhizin high producing strain	7.859
DRR006521	Root Winter glycyrrhizin high producing strain	1.443
DRR006522	Root Winter glycyrrhizin high producing strain	1.721
DRR006523	Root Summer glycyrrhizin low producing strain	8.820
DRR006524	Root Summer glycyrrhizin low producing strain	9.544
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.245
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.291

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.917
SRR2868004	Drought Stress (root)	13.792
SRR2967015	Control (root)	11.478

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.296
SRR9715740	Leaf	1.062
SRR9715741	Leaf	1.019
SRR9715739	Root	2.252
SRR9715742	Root	6.732
SRR9715743	Root	4.406

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.198
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.594
SRR8749030	Uninduced	0.059
SRR8749031	Uninduced	0.103
SRR8749032	Uninduced	0.371

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.328
SRR8400027	Control - Root	4.070