Gene detail

Gene detail information of Glyur000157s00015839

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G23400.1	5.00E-66	Leucine-rich repeat (LRR) family protein
NR	NP_001241099.1	0	probable leucine-rich repeat receptor-like protein kinase At1g35710-like precursor [Glycine max]
COG	YP_004775215.1	3.00E-44	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8VZG8\|Y4885_ARATH	1.00E-70	Probable LRR receptor-like serine/threonine-protein kinase At4g08850 (Precursor)
trEMBL	tr\|C6ZS05\|C6ZS05_SOYBN	0	Receptor-kinase like protein {ECO:0000313\|EMBL:ACM89599.1}

Sequence

Transcript Sequence

>Glyur000157s00015839.1
TGTCCCTTGAAGTGTGGACTATTTTGTCAAAATGAAGTCCAAGCCAACATTCTTAAGAGCCATTTTTTAGTTGTAAGAAAGCATTCCATAAGCTAAGCTCCATTTTGATAGAGCAACATGGATTATCAGCTTCTACAAATAGTGGCACTGCTNACAGTGATACTGATAGCATTTGGAGGAGACATGAGGAGAACTACAGAAGCTTGCAGTTCAGTTGACTTGGAAGCCTTGATAGGATTCAAGAATGGAATTCAGATGGATACATCCGGTCGCGTAGCGAAATGGGTTGGTAGGAGCTGCTGTGAGTGGGAAGGTATTGTCTGTGACAATGCAACCACTAGAGTGACACAGATCCATCTACCAGGGATCATAGATGGAGATTTGTTTCAAACCCAGATGATTGGCCAGATTTCTCCTTCCATTACACTCCTCACCTCTCTTGAAGTCATCGATCTCGGCGGTTTAGTAGGCCTCCATGGAACAATTCCACAAACAATTGGTCTACATTTGCCAAACCTCCAAAAGCTCTACCTTTATGGCAACAATTTAACTGGCCCAGTACCAGAAAGCATTGGTACAATACCCCTCTCACTTGGGAACTTGACAAATTTGGTAGAATTGGATGTTCATGACAATGCTCTTACGGGTCATATACCCGATAGCATTGGTCAGATGCAGGCTCTGGAAAAGCTTGATCTTTCAAGCAATTTGCTAAGTGGGAGCATACCTTCTTCACTAACCAACTTAACTGCCATTTCAGTTTTGTATATGGACAACAACTCCCTTGAGGGAACCATCCCATTTCCCTCAAAATCTAATGAAATGCCTTCTCTGGGATTCTTAAGACTCCATGATAACCATCTGAGTGGAAATATACCTCCCAGCCTTGGCTACCTGGTTTCTCTTCAAAGAGTTTCATTATCAAACAACAAACTTGAAGGAGCATTGCCTTCTAGTGTGGGCAATTTGCTTTCTATGACAGAGCTTTACCTCAGTGGCAATTNCTTGTCTGGCCAAATACCAAAATCAATAGGCCAACTCTCTCAGCTCATAATGCTGAACATCTCCAATAACTTGATTGAAGGGCCATTGCCTCAAGAGATGTCTTCCCTTCAAAATCTTCAAGCACTTGATCTTTCTTTCAACCCTCTTAACCTCACTGCCTTCCCAGAATGGTTAACAAACCTGTCATCGCTCTCGCGCATCTACTTCGCAGGCTGCGGCATCCAGGGCCAAATCCCAAACCTTTTGCAAAGAACACACAGTCCAATACAGGAACTGGACTTATCAGTGAACCTTCTCATTGGAGCCATACCATCATGGATAGGATCCCTCAGTCAGCTCTACTTGTTAAATCTCTCAAGGAACTCGCTTGATTCACGCATCCCGGATTCCATTACAAACTTGCATGATCTAGGTGTTCTTGATCTCCACTCAAATAAGTTAACAGGCTCCATAACTGGAGCATTCGATATTGATCAGCAAGGTACTTCTTCTGGGGGATCACTAACATATATTGATCTTTCTGATAACAACTTTTCAAATGGGGTTGAGGGAATTGGTGCAGGAGGGCAGCTTAATATACAGTTTTTGAATTTGTCTCACAACCTTCTGAAGGGAACATTGCCAAGTTCCCTTGGGAGACTGAATTCCATTCACAGTTTGGATTTGAGCTTCAATGAGTTAGCCTCCAACTTGCCAGAGGTGTTGGCAAACTTGACCATGTTGGAGAGATTGAAGCTGCAAAGGAACCATTTCAGTGGCAATATACCCAATGGACTTCTCAAGTTGAGAAAGCTGAAGGAACTGAATTTATCAGACAATGTACTTGAAGGGGAAATCCCAGAGGGTAAACCACTAATTGACTTTCCTGGGAGTTCATATTCTGGAAATAAAGGTTTGTGTGGGAAACCTCTCAGTCCTTGTAAACTTTGAGGATTGTCAGATATCATTNGAAACCCAGGAATTCAACCAAAATTGTAGCTTTACTCAAGACAAGTCTGAAAACGTTGTTTTTTGTTTTTTTGTTTTTTGGTTTTGNTTGGTGTATAACTACAAAGCAGTGCATTCTTGTTTCATTTCACTACGAAAAGTAAAGAATCTTTGGTATCCCTGAACTTTCTTCTTATGTCCCTCTACAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00157	208988	211252	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000157s00015839.1	PF08263.7	LRRNT_2	34	70	5.80E-07
Glyur000157s00015839.1	PF00560.28	LRR_1	133	155	0.096
Glyur000157s00015839.1	PF13855.1	LRR_8	163	223	5.60E-08
Glyur000157s00015839.1	PF00560.28	LRR_1	262	284	0.77
Glyur000157s00015839.1	PF13855.1	LRR_8	288	345	1.50E-07
Glyur000157s00015839.1	PF13855.1	LRR_8	488	547	1.90E-06
Glyur000157s00015839.1	PF00560.28	LRR_1	560	577	0.84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.278
SRR1783600	control	8.406
SRR1783602	moderate drought stress	4.353
SRR1811619	moderate drought stress	4.350

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.768
DRR006520	Root Summer glycyrrhizin high producing strain	16.558
DRR006521	Root Winter glycyrrhizin high producing strain	0.473
DRR006522	Root Winter glycyrrhizin high producing strain	0.465
DRR006523	Root Summer glycyrrhizin low producing strain	6.290
DRR006524	Root Summer glycyrrhizin low producing strain	6.333
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.773
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.623

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.457
SRR2868004	Drought Stress (root)	10.883
SRR2967015	Control (root)	11.585

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.467
SRR9715740	Leaf	0.561
SRR9715741	Leaf	3.215
SRR9715739	Root	3.973
SRR9715742	Root	3.285
SRR9715743	Root	3.602

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.184
SRR8749028	MeJA induced 9h	2.574
SRR8749029	MeJA induced 9h	2.586
SRR8749030	Uninduced	1.997
SRR8749031	Uninduced	2.330
SRR8749032	Uninduced	2.489

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.737
SRR8400027	Control - Root	20.483