Gene detail information of Glyur000157s00015836 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58003.1 | 4.00E-15 | C-terminal domain phosphatase-like 4 |
| NR | XP_007154891.1 | 1.22E-29 | hypothetical protein PHAVU_003G156800g [Phaseolus vulgaris] |
| Swissprot | tr|Q00IB6|CPL4_ARATH | 1.00E-18 | RNA polymerase II C-terminal domain phosphatase-like 4 |
| trEMBL | tr|V7CC80|V7CC80_PHAVU | 5.00E-30 | Uncharacterized protein {ECO:0000313|EMBL:ESW26885.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00157 | 185415 | 185951 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.809 |
| SRR1783600 | control | 5.034 |
| SRR1783602 | moderate drought stress | 9.950 |
| SRR1811619 | moderate drought stress | 9.618 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.204 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.098 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.851 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.153 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.701 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.688 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.078 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.230 |
| SRR2868004 | Drought Stress (root) | 2.413 |
| SRR2967015 | Control (root) | 2.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.770 |
| SRR9715740 | Leaf | 3.997 |
| SRR9715741 | Leaf | 2.708 |
| SRR9715739 | Root | 1.258 |
| SRR9715742 | Root | 2.775 |
| SRR9715743 | Root | 3.128 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.024 |
| SRR8749028 | MeJA induced 9h | 0.883 |
| SRR8749029 | MeJA induced 9h | 1.704 |
| SRR8749030 | Uninduced | 1.476 |
| SRR8749031 | Uninduced | 0.937 |
| SRR8749032 | Uninduced | 0.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.804 |
| SRR8400027 | Control - Root | 5.354 |