Gene detail

Gene detail information of Glyur000157s00015821

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G59840.2	2.00E-101	cofactor assembly of complex C
NR	XP_007157549.1	7.68E-164	hypothetical protein PHAVU_002G078400g [Phaseolus vulgaris]
COG	YP_005070569.1	2.00E-30	hypothetical protein [Arthrospira platensis NIES-39]
trEMBL	tr\|V7CJL3\|V7CJL3_PHAVU	3.00E-164	Uncharacterized protein {ECO:0000313\|EMBL:ESW29543.1}

Sequence

Transcript Sequence

>Glyur000157s00015821.1
CTTCAAATGCAACCAGTAATAACAAACTCCCATGGAAGCGGGAACTGCGCTCCTAGTCCGTGTTACTCTCAACAACATTCACATTCCCATTCTCCTTCCGAATCGCACTACAAAATCAAAAACCGCATTCCAATTCCAACCGCGCTTCACTCGTTCATCTTCTCCTTCTCCTTCTTCTGTTTACAGTTACAGAGGGCCCAAGCCCAAACGCGACTTCCTCGCTGATTGGGTGTCGCAAAACGACGACGCCGTTCGCACCCTCCCAATCTACGTAGGCTCCGCCTCCCTCTTCGCCGTCCTCTTCAATCGCGCCATTTCCGGCATCGCCCCCGTCGCCGACGCCGGCAGTTCACAATCCAGAGCTGACCTCTTGACTTTAGGATTGGCCGTCACCAATATTTTGACTGGCCTCGTCTGGCTTTCCATAAGACCCAAATCTATATCTGTGGTAAATCCTCAAGGAGTTGAATGCAAGAGGTTGTGCACTGTTCTCCCTGATGTTGCACTTACTGAGCTTCTCTGGGTGTGGGAATCTCTATCAGATGTCACCTGCTGCCGGTCACTTGTTATTGTTTATGAGGGCAGTTGTGTACTTCAAATTGAATCTTCTCCTGGGGATGGTGAGGCTGTAAGTGTGGACACCAATAAATTGATGCAAGGATCAGTCTATCAGGGTGTTATGAAATCTGGAGCTCAGAGTTACTTGGCTAATCTATCTCTTTATCCTGGGAAATCTGAGCTGCCATTTCTTCCTTCAAATACTCAGGCAGTAATTTTACAACCACTTGGAGATAAAGGAATTGCAATTATTGGTGGTGACACAATACGAGGTTTCACTACTTCTGATCAGGCATGGATTTCATTTATCGGAGAGAAGCTGGATTCTACCCTTGAAAAATATGTGAAACATCTCCCTCTTACTCCCCAAGATTAAGTTTCGAAGATCTGCAAGGTAGCCTCTGATTTTTGTTTGTACTTGATTCCAGTGGTAATAAATCCTCGAACTTTCAGCCGAGTTCTTCAGGATACGAGGTTGAAATTGATCCCATGTATATGTATATTTTATCCGTTTTTTAAGGCAGTCCTTAAATTGATTAATAGTCAGACTAAATCAAAGTTAGTAATAGTAACATATTGTATACATATGCTCAATTTTTGTTAGGCCATGTGCGTATTTGATAGTTTTATTTTAGAGAGAATTACTCTTTTTACAGCTTCCTNATAAAAAATTTCCCTAAAAATAATCCCAAAGACACATGCTGGTGCTTCTGGTGGTTGACTTGGGGTTTCAAATTCTAACATTCCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00157	58797	63654	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000157s00015821.1	PF11152.3	DUF2930	77	284	2.30E-57
Glyur000157s00015821.2	PF11152.3	DUF2930	77	144	9.00E-11
Glyur000157s00015821.2	PF11152.3	DUF2930	159	238	4.30E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.766
SRR1783600	control	0.720
SRR1783602	moderate drought stress	0.757
SRR1811619	moderate drought stress	0.753

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.414
DRR006520	Root Summer glycyrrhizin high producing strain	0.574
DRR006521	Root Winter glycyrrhizin high producing strain	0.663
DRR006522	Root Winter glycyrrhizin high producing strain	0.643
DRR006523	Root Summer glycyrrhizin low producing strain	0.927
DRR006524	Root Summer glycyrrhizin low producing strain	0.910
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.428
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.656

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.861
SRR2868004	Drought Stress (root)	2.601
SRR2967015	Control (root)	1.402

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	11.622
SRR9715740	Leaf	26.063
SRR9715741	Leaf	7.371
SRR9715739	Root	0.770
SRR9715742	Root	0.942
SRR9715743	Root	0.577

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.255
SRR8749028	MeJA induced 9h	0.899
SRR8749029	MeJA induced 9h	1.874
SRR8749030	Uninduced	0.579
SRR8749031	Uninduced	0.378
SRR8749032	Uninduced	0.129

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.235
SRR8400027	Control - Root	1.086