Gene detail information of Glyur000157s00015819.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27200.1 | 1.00E-164 | Domain of unknown function (DUF23) |
| NR | XP_003517750.1 | 0 | PREDICTED: UPF0392 protein RCOM_0530710-like [Glycine max] |
| COG | YP_004726042.1 | 3.00E-11 | hypothetical protein WKK_02445 [Weissella koreensis KACC 15510] |
| Swissprot | tr|B9S2H4|Y232_RICCO | 0 | UPF0392 protein RCOM_0530710 |
| trEMBL | tr|K7K1N3|K7K1N3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G04515.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00157 | 56266 | 58077 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000157s00015819.1 | PF01697.22 | Glyco_transf_92 | 313 | 559 | 3.00E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.060 |
| SRR1783600 | control | 12.345 |
| SRR1783602 | moderate drought stress | 14.398 |
| SRR1811619 | moderate drought stress | 14.501 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 61.114 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 56.244 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.180 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.702 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 48.932 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 47.949 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.104 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.629 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.845 |
| SRR2868004 | Drought Stress (root) | 28.206 |
| SRR2967015 | Control (root) | 37.616 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 40.564 |
| SRR9715740 | Leaf | 43.071 |
| SRR9715741 | Leaf | 60.260 |
| SRR9715739 | Root | 137.117 |
| SRR9715742 | Root | 116.919 |
| SRR9715743 | Root | 114.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 49.224 |
| SRR8749028 | MeJA induced 9h | 40.614 |
| SRR8749029 | MeJA induced 9h | 32.464 |
| SRR8749030 | Uninduced | 18.232 |
| SRR8749031 | Uninduced | 18.637 |
| SRR8749032 | Uninduced | 19.429 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.311 |
| SRR8400027 | Control - Root | 42.304 |