Gene detail information of Glyur000157s00015818 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G27210.1 | 7.00E-135 | ARM repeat superfamily protein |
| NR | XP_004489938.1 | 0 | PREDICTED: microtubule-associated protein TORTIFOLIA1-like [Cicer arietinum] |
| Swissprot | tr|Q9T041|MAPT_ARATH | 1.00E-57 | Microtubule-associated protein TORTIFOLIA1 |
| trEMBL | tr|G7K6Y7|G7K6Y7_MEDTR | 0 | Microtubule-associated TORTIFOLIA-like protein {ECO:0000313|EMBL:AES96419.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00157 | 27338 | 31709 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000157s00015818.1 | PF13646.1 | HEAT_2 | 168 | 290 | 1.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 28.635 |
| SRR1783600 | control | 28.737 |
| SRR1783602 | moderate drought stress | 10.697 |
| SRR1811619 | moderate drought stress | 10.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.029 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.082 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.350 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.366 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.172 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.855 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.015 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 17.301 |
| SRR2868004 | Drought Stress (root) | 8.917 |
| SRR2967015 | Control (root) | 9.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.352 |
| SRR9715740 | Leaf | 1.101 |
| SRR9715741 | Leaf | 2.560 |
| SRR9715739 | Root | 6.649 |
| SRR9715742 | Root | 10.155 |
| SRR9715743 | Root | 9.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.430 |
| SRR8749028 | MeJA induced 9h | 12.094 |
| SRR8749029 | MeJA induced 9h | 10.519 |
| SRR8749030 | Uninduced | 4.464 |
| SRR8749031 | Uninduced | 1.943 |
| SRR8749032 | Uninduced | 2.898 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 30.408 |
| SRR8400027 | Control - Root | 32.366 |