Gene detail

Gene detail information of Glyur000156s00012018

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02780.1	3.00E-28	Ribosomal protein L19e family protein
NR	XP_007163079.1	7.75E-37	hypothetical protein PHAVU_001G204300g [Phaseolus vulgaris]
COG	YP_183936.1	1.00E-10	50S ribosomal protein L19e [Thermococcus kodakarensis KOD1]
Swissprot	tr\|Q9SRX2\|RL191_ARATH	2.00E-34	60S ribosomal protein L19-1
trEMBL	tr\|V7D094\|V7D094_PHAVU	3.00E-37	Ribosomal protein L19 {ECO:0000256\|RuleBase:RU000574}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00156	267566	268923	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

molecular_function
GO:0003735 structural constituent of ribosome

"

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000156s00012018.1	PF01280.15	Ribosomal_L19e	2	90	1.20E-19

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	12.032
SRR1783600	control	11.017
SRR1783602	moderate drought stress	14.156
SRR1811619	moderate drought stress	14.788

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.764
DRR006520	Root Summer glycyrrhizin high producing strain	40.405
DRR006521	Root Winter glycyrrhizin high producing strain	24.371
DRR006522	Root Winter glycyrrhizin high producing strain	24.566
DRR006523	Root Summer glycyrrhizin low producing strain	39.494
DRR006524	Root Summer glycyrrhizin low producing strain	38.700
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.904
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.897

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.386
SRR2868004	Drought Stress (root)	2.844
SRR2967015	Control (root)	3.133

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.782
SRR9715740	Leaf	2.490
SRR9715741	Leaf	1.572
SRR9715739	Root	1.551
SRR9715742	Root	1.519
SRR9715743	Root	2.416

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.247
SRR8749028	MeJA induced 9h	3.108
SRR8749029	MeJA induced 9h	3.166
SRR8749030	Uninduced	0.707
SRR8749031	Uninduced	0.181
SRR8749032	Uninduced	7.060

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.293
SRR8400027	Control - Root	3.933