Gene detail

Gene detail information of Glyur000156s00012017

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G03200.1	catalytics
NR	XP_004494343.1	PREDICTED: spermatogenesis-associated protein 20-like [Cicer arietinum]
COG	YP_001996309.1	hypothetical protein Ctha_1399 [Chloroherpeton thalassium ATCC 35110]
trEMBL	tr\|G7KRS7\|G7KRS7_MEDTR	Spermatogenesis-associated-like protein {ECO:0000313\|EMBL:AES82098.2}

Sequence

Transcript Sequence

>Glyur000156s00012017.1
AAAAAAAACATGAGCCACTTGTCAGTTGTCAAGGAAGAAGCCATTCCAAGTGTTGAGAAGTGAAGTAGTAGTATACATGGCGAACAACTGGAAGCAAGCAATTCGAATTTCGAAGCGAAGCGAANAGAAGAGTAACTCGACTGATACTACTCATAACAGACAGTAACAACACCTTCTGTTTCGCTTCTCCATAACTCTTCTATGCTCCGCCAGAGTTCTGTTGGTGTTGTTCATCGCCTTTTCTATCACCAACACCACCTACATANCACCACAAGGTTTCGATTCCCTTTCTCATTGCCACGTGTTACAACAGTTCCGAAGGTCCTCTCAATGGCAACATCATCTCATTCCCATTCCCACAAGTACACCAATCGACTTGCTTCCGAGCAAAGCCCTTATCTTCTCCAACACGCCCACAACCCTGTTGATTGGTATCCATGGGGAGAAGAAGCTTTCTCCGAAGCACGCCGCCGAGATGCACCTATCTTCTTATCAATTGGGTACAGCACTTGTCATTGGTGTCATGTTATGGAGGTTGAGTCTTTTGAAGACGAGGGGGTTGCAAAGTTGTTGAACGATTGGTTTGTTAGCATTAAGGTGGATCGAGAGGAGCGACCGGATGTTGATAAGGTATACATGACGTATGTGCAGGCTTTGTATGGTGGAGGAGGTTGGCCCCTGAGTGTGTTTCTTTCATCTGACTTGAAACCTTTAATGGGTGGAACTTACTTCCCCCCTGATGATAAATATGGCCGACCTGGATTTAAGACTATACTTAGAAAGGTAAAAGAGGCTTGGGAAAGTAAGAGGGATATGCTGGTCAAGAGTGGAGCATTTGCAATTGAACAGCTTTCTGAGGCATTGTCTAGTAGTTCAGATTCTGATAAATTGTCTGATGGTGTTTCAGACGATGCATTACGTCTATGCTCAGAGCAGCTCTCTGAGAGCTATGATTCAAAGTTTGGTGGTTTTGGATCCTCACCAAAGTTTCCCAGACCAGTTGAGATCAACTTGATGCTTTACCACTCTAAGAAGTTGGAGGATACCAGAAAGTTGGGTGGAGCTAACGAAAGTCGGAAAATGGTTTTCTTTAGCTTGAAATGCATGGCAAAAGGGGGCATTCATGATCATATTGGAGGGGGTTTTCACAGATATAGTGTGGATGAGTGCTGGCATGTTCCACATTTTGAGAAGATGCTTTATGATCAAGGGCAGCTTGCTAATGTTTATTTAGATGCTTTTTCTATCACAAAAGATACCTTCTATTCATGTATATCACGGGATATCCTTGACTATTTGAGGAGAGACATGATTGGTCCAGAAGGTGAAATCTTTTCNGCAGAGGACGCTGACAGTGCAGAGACTGAAGGAGCTACAAGGAAAAAGGAAGGAGCCTTTTACATATGGACCAGCAAAGAGGTTGAAGACATACTTGGAGAGCATGCTGCTCTTTTTGAGGAGCACTATTACATAAAGCAGATGGGTAACTGTGACCTATCTGAATTGAGTGATCCTCATAATGAATTCAAGGGAACGAATGTCTTGATTGAGAGAAAGGATCCTTCAGAAATGGCATCAAAATATGGCATGTCAGTTGAGACATACAAAGAAATTCTTGGAGAATGTAGGCGTAAGTTGTTTGAAGTAAGGTCAAGGCGCCCAAGGCCACATTTGGATGATAAGGTAATTGTGTCTTGGAATGGACTGGCAATCTCATCTTTTGCTAGGGCTTCTAGGATCCTCAAGGGTGAAGTTGAAGGGATCAAATTCAGCTTTCCTGTTGTTGGCACTGAACCAAAGGAGTACATGAGAATTGCAGAAAAAGCAGCATCCTTTATTAGGAAGCAACTTTACAATGAGGAGACTCACAGGCTACACCATAGTTTCAGAAATTCTCCATCCAAAGCTCCTGGTTTCTTGGACGATTATGCCTTTCTGATTTCTGGATTGCTGGATCTCTACGAATTTGGCGGTGGAATCAACTGGCTTCTATGGGCCATTGAATTGCAGGAAACCCAGGATGCTTTGTTCCTTGATAGGGATGGGGGTGGATATTTCAATAATACAGGAGAAGATTCTTCAGTTCTTCTCCGTGTGAAGGAAGACCATGACGGGGCAGAACCCTCAGGGAACTCAGTTTCCGCTATAAATCTTATAAGATTGGCTTCCATGGTTTCTGGAAGTAAGGCTGAGCATTATAAGCGAAATGCTGAACATCTATTGGCAGTCTTTGAAAAAAGATTGAAAGATATGGCTATGGCANTGCCTTTAATGTGTTGTGCAGCAGACATGCTGCGCGTACCTTCCCNGAAGCAAGTGGTCGTGGTTGGTGAAAGGACTTTTGAGGAATTTGAAACCATGCTTACCGCAGCTCACCCAGTATATGATCCCAACAGAACAGTTATTCATATAGATCCCAACAATAAAGAAGAGATGGAATTTTGGGAAGTAAATAACAGCAATATTGCTCTAATGGCGAAGAATAACTATGCAGTCAACAAGGTTGTAGCTCTTGTATGCCAAAACTTCACTTGTAGCGCCCCCGTGACTGATCATTTATCACTTGAAGCTTTGCTCTCCCAAAAATCCTCCTCGTCGTNGGCATAAGCTATTGGTTCTGATTTGTAAGCTCCCTCTTCATCTGCATAACCGTGCACGAGGAGCCAGAGATTTTCTTCAAATTTGATCAGAATAATGGAAGTATGTGTCCTTTTCTTTAGGTAGACGATTGCAAAAAAAAAAAAAAAAATATCTTTTCCAATTTGCGTTTATTCACTTACACTTGTATACTGGGGCAATAAAGTCACCATGGCTAGGCTGCCTAAGATATTCTCCGTATGTATGTTGGTCCGGGCGATATGTTGTAAAAAGGTCATATGTAATAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00156	260667	266321	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000156s00012017.1	PF03190.10	Thioredox_DsbH	56	216	9.20E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.560
SRR1783600	control	21.921
SRR1783602	moderate drought stress	25.486
SRR1811619	moderate drought stress	25.187

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.647
DRR006520	Root Summer glycyrrhizin high producing strain	15.362
DRR006521	Root Winter glycyrrhizin high producing strain	20.916
DRR006522	Root Winter glycyrrhizin high producing strain	20.798
DRR006523	Root Summer glycyrrhizin low producing strain	17.706
DRR006524	Root Summer glycyrrhizin low producing strain	16.908
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.471
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.646

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.486
SRR2868004	Drought Stress (root)	25.485
SRR2967015	Control (root)	22.626

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.159
SRR9715740	Leaf	59.743
SRR9715741	Leaf	56.614
SRR9715739	Root	6.273
SRR9715742	Root	17.683
SRR9715743	Root	13.207

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.596
SRR8749028	MeJA induced 9h	11.348
SRR8749029	MeJA induced 9h	5.167
SRR8749030	Uninduced	4.406
SRR8749031	Uninduced	2.170
SRR8749032	Uninduced	2.380

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.543
SRR8400027	Control - Root	26.461