Gene detail

Gene detail information of Glyur000156s00012015

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G62910.1	0	Peptide chain release factor 1
NR	XP_004494342.1	0	PREDICTED: peptide chain release factor 1-like [Cicer arietinum]
COG	YP_001660355.1	5.00E-170	peptide chain release factor 1 [Microcystis aeruginosa NIES-843]
Swissprot	tr\|Q8RX79\|APG3_ARATH	0	Peptide chain release factor APG3, chloroplastic {ECO:0000305} (Precursor)
trEMBL	tr\|I1JQI6\|I1JQI6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G36900.1}

Sequence

Transcript Sequence

>Glyur000156s00012015.1
AGCCCAATACCTCTAGTGCTGAACAAATAGTGAGAGAGCCCAACCCAATTCAAACCGCTCTTTCTCTATCCGTGTCTTCNGCTACTTTATCCGAAAATACTCATTGGCATTGCTGGTAGTGGTTGCCGTGTGACTGTGAGCATGAGTAGCTTAACGGCGAGCTTCACGGCTCGAATATGTGGCGCACGCCGCGACATAGTCCCTCTACGACACCGTTCCCTTCATCAATTCACTAACGGACGCGTCACCGTTGCACCCGGCGGCAACACCACGCTCACGCCTACAAGAATCGTCTGCATGGCGGAGCCTTATCTGATAACGAAGCTGGAATCTGCTGAGAAGACATGGAATGAATTATCGGTGAAACTTGCTGATCCAGACATTGTGTCTAATCCCAGCGAGTACCAGAAGGTGGCACAATCAGTGGCAGAGCTCAACGAGGTTGTGTCCACGTACAAGAGATTTAAAGACTGTGAGAAGCTGCTAGAAGAAACCAAAGCTTTAACAAAGGATGATGGCAACGATGCGGATATGGCGGAAATGATATCTTATGAAATAGACTCTTTGTCCAAGCAACTCTCAGAGCTAGAGGACAAGCTTAAGGTTTTACTGCTTCCCAGTGATCCTCTGGATGCAAGAAACATACTGCTTGAAGTAAGAGCAGGTACTGGTGGTGATGAGGCTGGAATATGGGCTGGTGATCTTGTCCGAATGTATGAAAAATACAGTGAACGGAATTCTTGGAAATTTTCTCGCGTCTCATGCTCTGAGGCAGAAAAAGGAGGATACAAAACTTACGTGATGGAGATAAAAGGAAAACGTGTCTACAGTAAATTAAAATATGAATCTGGTGTCCACAGAGTTCAACGTGTTCCTCTAACAGAAACACAGGGTCGTGTGCATACTTCTACTGCAACAGTGGCCATCATGCCAGAGGCTGATGAAGTTGAAGTTGTAATTGACCCGAAAGATATTGAACTGACAACGGCACGTTCTGGGGGTGCTGGAGGCCAGAATGTTAACAAGGTTGAAACGGCGATTGATCTTGTTCATAAACCAACGGGAATCCGCATCTTTTGTACTGAAGAAAGGACTCAGATTCAGAACAAGAATCGTGCATTTCAGTTACTCCGAGCCAAACTATATGATATAAAGGTAAGAGAGCAGCAAGAGTCAATACGAAATCAAAGGAAATTACAGGTTGGTACAGGAGCACGTGCAGAAAAAATTCGGACATACAATTATAAGGACAACAGGGTTACTGACCACAGATTGAAAATGAACTTTGAGCTCACCTCTTTTCTGGACGGTGACATAGAAGATGCTGTTCAGTCTTGTGTTACGACGGAGCAAAAGGAGCTCCTGGAAGAACTTGCNGAGTCTGTGGGTGCTCCTGCTGGATGATGCGCAGCAGATTTTGCCCATGTGGTAGGAAAATTTTTGATGGATCACTTTTCATTAGGGAAGATCTGCCATATTGTTCTCCTGATTGTGTTGTTGATTGATTGTTGTAGATATGGGCCGGTTTTACATGTGACATTACGTTAGTACTCTCGTGTGTTGGTAAAAAATCTGTTTCCTTATGTAAAGGACAATTCTTGCATTTTGGGCTCACTGCATTGTATGTGGTATTAAATTGCGAGTTCTATTCCCAGTTCTTTCATCCCTTCTGGTTGGGACCTGGGACCAACTCCCAAGCCAGCTCCCACATGCCTATGCCAAAAAGGTTGAAGCCTTGAAGAGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00156	253182	259066	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006415 translational termination

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0003747 translation release factor activity

GO:0016149 translation release factor activity, codon specific

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000156s00012015.1	PF03462.13	PCRF	123	235	6.40E-38
Glyur000156s00012015.1	PF00472.15	RF-1	266	377	1.50E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.804
SRR1783600	control	5.864
SRR1783602	moderate drought stress	6.905
SRR1811619	moderate drought stress	6.796

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.240
DRR006520	Root Summer glycyrrhizin high producing strain	7.161
DRR006521	Root Winter glycyrrhizin high producing strain	3.511
DRR006522	Root Winter glycyrrhizin high producing strain	3.298
DRR006523	Root Summer glycyrrhizin low producing strain	8.243
DRR006524	Root Summer glycyrrhizin low producing strain	8.372
DRR006525	Leaf Summer glycyrrhizin high producing strain	40.279
DRR006526	Leaf Summer glycyrrhizin high producing strain	40.276

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.461
SRR2868004	Drought Stress (root)	8.098
SRR2967015	Control (root)	9.170

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.823
SRR9715740	Leaf	45.656
SRR9715741	Leaf	29.229
SRR9715739	Root	2.335
SRR9715742	Root	4.062
SRR9715743	Root	3.207

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.784
SRR8749028	MeJA induced 9h	8.461
SRR8749029	MeJA induced 9h	9.321
SRR8749030	Uninduced	4.373
SRR8749031	Uninduced	3.106
SRR8749032	Uninduced	2.891

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.676
SRR8400027	Control - Root	7.829