Gene detail information of Glyur000156s00012014.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G47850.3 | 5.00E-124 | Zinc finger C-x8-C-x5-C-x3-H type family protein |
| NR | XP_003518955.1 | 0 | PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1 [Glycine max] |
| Swissprot | tr|Q84W91|C3H32_ARATH | 2.00E-168 | Zinc finger CCCH domain-containing protein 32 |
| trEMBL | tr|I1JFH1|I1JFH1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G17260.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00156 | 245886 | 248577 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C3H |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000156s00012014.1 | PF00642.19 | zf-CCCH | 49 | 75 | 1.40E-07 |
| Glyur000156s00012014.1 | PF00642.19 | zf-CCCH | 101 | 125 | 9.40E-11 |
| Glyur000156s00012014.1 | PF00642.19 | zf-CCCH | 146 | 171 | 1.60E-09 |
| Glyur000156s00012014.1 | PF00642.19 | zf-CCCH | 302 | 328 | 5.20E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 39.690 |
| SRR1783600 | control | 39.504 |
| SRR1783602 | moderate drought stress | 39.937 |
| SRR1811619 | moderate drought stress | 39.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.882 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.675 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.277 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.356 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.248 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.463 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.418 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 23.822 |
| SRR2868004 | Drought Stress (root) | 22.873 |
| SRR2967015 | Control (root) | 24.794 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.571 |
| SRR9715740 | Leaf | 14.630 |
| SRR9715741 | Leaf | 16.610 |
| SRR9715739 | Root | 21.544 |
| SRR9715742 | Root | 25.409 |
| SRR9715743 | Root | 26.188 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.136 |
| SRR8749028 | MeJA induced 9h | 11.972 |
| SRR8749029 | MeJA induced 9h | 9.939 |
| SRR8749030 | Uninduced | 5.768 |
| SRR8749031 | Uninduced | 1.925 |
| SRR8749032 | Uninduced | 4.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.210 |
| SRR8400027 | Control - Root | 32.866 |