Gene detail

Gene detail information of Glyur000156s00012008.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G62940.3	9.00E-77	Cysteine proteinases superfamily protein
NR	XP_007163067.1	0	hypothetical protein PHAVU_001G203400g [Phaseolus vulgaris]
trEMBL	tr\|V7D1I7\|V7D1I7_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW35061.1}

Sequence

Transcript Sequence

>Glyur000156s00012008.1
TTGCACTCTCACTCTGCTTTATTCTGGGACACAAGCATCGTCGTCTCCGCCGTAGGTGCTACTAGGAATTTCCCCAAGCGTGCTGAAACTTTTGTAGTTGGAAACTCTGATTACATGTTCACATATTTTGATTTGGTTGCTCCAATGGAGGCTACCCAAGAAATTGAGGAGAATGTACACGAAGAAGTGATTTCAGACAAAACATCTGAAAAGGNGCCAGAAGCCCGTGATGAAATTCTTTCACGGCACAGGAAGGAGATACAACAGCTGCAGAAAAAAGAAGTTGAAATGAAAAAGGCAGCAGCTAGAGGTAGCAAGGCTGAGCAAAAAGCTAAGAAGAAGCAAGTGGAGGAAGAGGTTTCCCAACTTTCTGCTAATCTCAAGGAGAGACATGCCAAAGAACTAGCTGCATTAGGCTATAGCAGTGGTAACAGAAATGAAAAGAGCAATTTGGACAATTTGGTGAAGGCCATAGCTGGAGTATCTGTCAGTAGTCAACCCGAGCATACAAAGGTCAGCAAGGCCAAACAGAGGCGAGACAAAAGAGCTCAACAAGAAGCGGAGAGGGAGCAGAGAATCCAAGCAGAGCAGAGTGACATTATAAGCGATCGCATGATTGAAAACGAGAAACTTGAAAAAAAGTTGAAGCCTCTTGGTTTGGCTGTTTGTGAAATAAAGCCTGATGGGCACTGCCTCTATAGAGCTGTTGAGGATCAGCTGGCCCTCCTCTCTGGGGGCAAATCTCCTTATACATACCAAGAACTCCGAGAAATGGTGGCCGCTTACATGAGAAAGCATACATCTGATTTCCTTCCATTCTTTCTGTCAGAGAATCTGATTGAAGATGGTTCTGACGAATCACTTGCTCAGAAGTTTGAAAATTATTGTAAAGAAGTGGAGTCCACAGCAATATGGGGAGGACAACTAGAGCTTGGTGCCTTGACTCACTGCCTGAAGAAGCATATCATGATATTTTCAGGGTCCTTCCCTGATGTGGAGATGGGGAAGGAGTATAAATCCGATATCGGTATTGGCTCGTCTAATTCGAGTATCATGCTTTCTTACCATAAGCATGCTTTTGGGCTAGGTGAGCATTATAATTCCGTGGTCCCAACANGATGAAATGGGCATAGTATATTATCATATGGATACTTATCATGTCCCTTGTAGCATTTTTCTTTACAGCCAGACATTTGGTGGAAGGTCTCTTGAAAACCGAAGTTGTGATTTGGGATTGATTGGATATAACTGTACATCTCTTAACTGTAATTGATATTTTTCTGGATGATTATATCGATAATTATGTAGCAAATGCTCTTTTGGCATCAACTGATTTTGAGCGATTTGGTAAATCCTTATATCGAATGAGATGAAACTTTTATTCAGAGGCTCTTTTCAGTCTTTTGTGGTGCTGAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00156	215764	219595	+

Gene family

Gene family	subfamily
Ubiquitin Family	OTU

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000156s00012008.1	PF02338.14	OTU	227	366	8.70E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	33.230
SRR1783600	control	33.104
SRR1783602	moderate drought stress	26.421
SRR1811619	moderate drought stress	26.176

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	60.281
DRR006520	Root Summer glycyrrhizin high producing strain	60.330
DRR006521	Root Winter glycyrrhizin high producing strain	57.119
DRR006522	Root Winter glycyrrhizin high producing strain	55.227
DRR006523	Root Summer glycyrrhizin low producing strain	80.762
DRR006524	Root Summer glycyrrhizin low producing strain	80.762
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.547
DRR006526	Leaf Summer glycyrrhizin high producing strain	34.101

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	85.033
SRR2868004	Drought Stress (root)	81.306
SRR2967015	Control (root)	81.050

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.409
SRR9715740	Leaf	72.039
SRR9715741	Leaf	66.472
SRR9715739	Root	10.077
SRR9715742	Root	35.350
SRR9715743	Root	32.631

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	88.506
SRR8749028	MeJA induced 9h	82.634
SRR8749029	MeJA induced 9h	71.039
SRR8749030	Uninduced	32.654
SRR8749031	Uninduced	30.745
SRR8749032	Uninduced	21.559

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	86.108
SRR8400027	Control - Root	77.144