Gene detail information of Glyur000156s00012005 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G30540.1 | 2.00E-43 | Thioredoxin superfamily protein |
| NR | XP_003625870.1 | 7.49E-60 | Glutaredoxin [Medicago truncatula] |
| COG | YP_001527212.1 | 1.00E-06 | glutaredoxin [Azorhizobium caulinodans ORS 571] |
| Swissprot | tr|O04341|GRXS9_ARATH | 2.00E-55 | Monothiol glutaredoxin-S9 |
| trEMBL | tr|G7KQZ6|G7KQZ6_MEDTR | 3.00E-60 | Monothiol glutaredoxin-S2 protein {ECO:0000313|EMBL:AES82088.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00156 | 209736 | 210276 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000156s00012005.1 | PF00462.19 | Glutaredoxin | 13 | 75 | 3.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 37.560 |
| SRR1783600 | control | 38.021 |
| SRR1783602 | moderate drought stress | 54.137 |
| SRR1811619 | moderate drought stress | 52.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 54.400 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 55.229 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.558 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 33.112 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 67.828 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 70.345 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 144.109 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 145.790 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 61.491 |
| SRR2868004 | Drought Stress (root) | 74.234 |
| SRR2967015 | Control (root) | 166.063 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 207.138 |
| SRR9715740 | Leaf | 189.892 |
| SRR9715741 | Leaf | 116.479 |
| SRR9715739 | Root | 31.903 |
| SRR9715742 | Root | 108.225 |
| SRR9715743 | Root | 78.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 107.768 |
| SRR8400027 | Control - Root | 104.045 |