Gene detail

Gene detail information of Glyur000156s00012004

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G22050.1	4.00E-27	membrane-anchored ubiquitin-fold protein 6 precursor
NR	XP_002268145.1	3.35E-62	PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Vitis vinifera]
Swissprot	tr\|Q6Z8K4\|MUB3_ORYSJ	3.00E-45	Membrane-anchored ubiquitin-fold protein 3 (Precursor)
trEMBL	tr\|D7TP35\|D7TP35_VITVI	1.00E-62	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI32258.3}

Sequence

Transcript Sequence

>Glyur000156s00012004.1
ATTTTTTATGAAATCCCTCTGTTTTTTGTTAATTACTTATTACTTATCTATNACTAATTTTTCTTCTATTTCCATCTTTCTTGAATATTTAATAGCATTTGGGTGTAAAAAAAATCTTTTTTCTATTTGCAACACCGTTGACGTGGCAGAATACGAGTAGCCCACAGTCGTTGTGTTCGTAGATCCGGTCGCAGAAAATAAAAATAGATATGCTCTCGTGACACCCACCCCACCCNCAGTAACCGCTATAGTACTGTTAGATCCCTTCTCTCTCTGTGAATATAGATAAGAGAGAGAGAGAGAGCAAAAAAAAAAAAAACGTAGTGAAGAAACGAACCCACGCGGCCCCGCCCCGCTCAGATCTCTCTGCCTCTCTAATACACTATCACTTCCCACTGATCATCCATTAATGGCTTCTTAACCAGAGACATCTCTCGTAACGATTGTTTGGAGAAGCAATTGGATCATATGAGGTGTTCACTTGGTTGTATTGGTTCACCAGCTGTCAATTCAGATGTGCAATTTTTGCAAGCTTGCTTTAATAAGGAAATTCCCCTCAGAGTCACACAGGCTATCATGGCTGAAGGAGAGGAGCGTATTGAACTTAAATTCCGCATATATGATGGAACAGATATAGCACACAATACTTATTCATCNTCTACGACAGTAGGTACCCTTAAGCAAAAGCTAGTTGCTGAGTGGCCTCAAGGCAAAACAGTTGCACCGAAGTCAGTAAATGACATAAAACTTATACANGCTGGTAAAGTTTTGGAAAACAGCAGAACACTTGCTGATTCCAGAATAACTTTTGGTGACATCCCTGGTGCTGCTATTACCATGCATGTTGTAGTACANCCTCCGGTAGCTAAAAAGAAGACAGAGAAGAATCAGGAGGGCAAGAAAAAGATGAATTCATGCTCATGCACTATCCTTTAGATTAGAAAGCATACCTTTTGGCTGCCCTTGAAGATAAGGTTGCACTTTTCCTATTTTTAACTCTCGGGATCATGGGTTGGCACTCAGTGCGCTATCCAATTGCATTGCGTAAGACATGTTTGGCTTATCAAATCGTTGTTGCTTGCTTCTATTAATGTTCAATTCATTTCTAGTCATTGTCTTCGGAGTGAAATCAGATATTAGCATTGTAAAATTCTCACCTCAACAAGTACAATAAGAGTGTTGCAGGCCACAAACCTTGGCCATAAGTCAAGATCAGACGGCCCCCAACATTTGATGAATGCATACTGTTTGGATTTTGTAAGTTATATATTTTGACAAAAAAAAAGTTTCCCCTTCACATTTGATTCAGCTGGATTCCCGTGGATCAGTTAAGCAACGACCGGCATTAAGTGTGAGTTGGGATCCTCTCAATTTCTTCTATTACTATGCTTTTGGGGGAAATAAATGATATAAATGTGATACATAAGTGTCATTTATTCCATTTATTCTCCCAAAAACATAGTAATGGAAGAAATGGAGAGAAAAATAAATGGAGATGATCCTAACTCATTAAGTGTACCCCGTCACCGTTTAATGGCATGCATGAGAATGACTTGAATGACTTTTTTATTTGTGTTACCATNTTATTGGTGTCAACTATCAACGAGTAGTTTTGCCGATGACTAATTTTTCACAAGGAAATTTGATTGGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00156	198117	202249	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000156s00012004.1	PF13881.1	Rad60-SLD_2	42	153	5.90E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	41.374
SRR1783600	control	41.683
SRR1783602	moderate drought stress	35.888
SRR1811619	moderate drought stress	36.312

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	52.967
DRR006520	Root Summer glycyrrhizin high producing strain	51.177
DRR006521	Root Winter glycyrrhizin high producing strain	158.985
DRR006522	Root Winter glycyrrhizin high producing strain	155.046
DRR006523	Root Summer glycyrrhizin low producing strain	65.749
DRR006524	Root Summer glycyrrhizin low producing strain	64.148
DRR006525	Leaf Summer glycyrrhizin high producing strain	29.350
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.098

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	53.198
SRR2868004	Drought Stress (root)	58.448
SRR2967015	Control (root)	58.985

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	38.072
SRR9715740	Leaf	46.827
SRR9715741	Leaf	51.551
SRR9715739	Root	10.031
SRR9715742	Root	30.039
SRR9715743	Root	25.677

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	43.391
SRR8749028	MeJA induced 9h	51.713
SRR8749029	MeJA induced 9h	47.906
SRR8749030	Uninduced	63.704
SRR8749031	Uninduced	51.988
SRR8749032	Uninduced	48.264

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	56.300
SRR8400027	Control - Root	60.922