Gene detail

Gene detail information of Glyur000156s00012002

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G47890.1	4.00E-59	B-box type zinc finger protein with CCT domain
NR	XP_003625866.1	0	CONSTANS-like zinc finger protein [Medicago truncatula]
Swissprot	tr\|O82256\|COL13_ARATH	1.00E-81	Zinc finger protein CONSTANS-LIKE 13
trEMBL	tr\|G7KQZ2\|G7KQZ2_MEDTR	0	Zinc finger constans-like protein {ECO:0000313\|EMBL:AES82084.1}

Sequence

Transcript Sequence

>Glyur000156s00012002.1
CCCTAATCACAAAAATATCAATTCAATTATCCTCNCCTCACTGCATTTATTTATTACCCACGAAAAAAAAATGAACAACTACTTGTTCAAGTAGTTCTTGNGCCCCAAGAAAGCACTCGTGAATAATCCTCCTTTGCTCGGTCGCACTGGCACATGCCAAATTCTCCCTCCGCGCTGTTTTAAAGCTATATCTCAAAACCCACNTAACCTTTTCTCTCCTCGAGTCTCTTCTCAGATTTGAAAACCNTACAACCATATTTTCTGCTCATTCACACACACACANAAAAAACTCAGTCACAAACATAGGAAGAAGAAGAAGCTATGAGTGGTTCTCCTCCGAGACACCCAAAAGCACAACTAGTGCGACCCTGTGACTATTGTGGGAACTCAACAGCAGTTCTCTACTGCAGAGCTGACTCAGCAAAACTCTGTCTCACTTGTGACCGTGAGGTTCACTCCACNAACCAGCTCTTCTCCAAGCACACTCGCACTCTTCTCTGCGATGCCTGCGATGATTCCCCTGCCACNATACTCTGTTCCACGGAGTCCTCTGTTCTGTGCCAGAACTGTGACTGGGAAAAACACAACCTTTCCCTCTCTCCCCTTCACGAACGAAGACCCCTCGAGGGATTCAACGGGTGCCCTTCTGTTACTGAACTCTTGTCCATCATGGGGTTCCAAGATGTTGGGAAAAAATCGCTGCTTTCGACACAGGAAAGTGGGGATGGGTTTCTGGGGTACGANATTGAAGGGCTTTCTTCTGATTTGTTAGTTTGGGATACCCCTTCTTTTGTTAGTCTTGATGATTTGATTTCTTCTTCTGCCTCTTCTCATAACTTTCACGCTATGGAGGTTCCTCCTTTGCCCAAGAATCGTAAGGCTGCTTGTGGGCGACACAAAGAAGAGATTTTTATTCAGCTTCGTGAACTAACCAAGTCTGAGCCCTTAGANCCTGAACCTCAACAGTATCTGCCATCAGGAAATTTATCTACAGGTTTTGAACGTGACATGAAGGATGATATCGTTCCTTCTCATGAGTGGCTTAGAGAAAGCAGTGAGCCTATGTATCAAGTTGTTCCTCCTGATACATCATTCAGAGCTTATACCGAAGAAATTCTGGTTAAACATTCTACACCTGCTGTTGAGGAGACTCATCATACCTATGGCAACAATGGAGGGACACCTTCAAAATCTCTTAAATCTGAAACCTTNCCGACTACTCCTAATGCTGTGCCTGCTCCATATGAGGTATCGAGTCAAGAAAGGGATTCTGCATTATTACGATATGACAAGCATATAAGGTATGAATCACGAAAAGTTCGGGCGGAGAGCAGGATAAGAGTGAAGGGCCGATTTGCCAAGATGGAACAATGAAAACATGGTAGGCTGCTATGACATCGTAGCTAAGATTNTTGGCTCACATCACATAAATTATGTAACATGTCCCTGGTATTGTGAACTTCACTATGTTTTGCAAGTGATGTATCCTTGGATCCAGAGCTTGGATATTATGCAGATAAAGAGGCCAATTCTTCTGTGAATCAAAGTCAAATTTATGGGGGTCTTTGGCCTTAGATTGTGTTTGGAGGATACATGGTACCTTGTGGACTTGGATTTTTGTCCTCTCAGTTCTCAATAACAACAAAAATAGTATGAGATAGCTCATGGGCTTCTTAAATAGATTTGACCTCAGTGTTGAACANATGGGAGCAAGAGAAAGCAAGTTACACTTAACTATATGTTTGACTATTCTGAAAAGGTTGAGGTATAACCCCAGCTCAAAAAGTGTTAGCTGGAGATTTATGAACAAAGGAATGAACTGTGTCTTCTTCAATTTCATCTCTTGTTTGATTTGGGTGATATGTGTCTACTGGATCTGAATTCAGCTGAGACCTGCATGTGTTTCACCCTCCTTTGAGTTTACCTGAATATGTGCTTCAAAGTAGTTCAAGAACAATGAATGCTGCAGGGGCAAATTAAACTGTTTTAAGTTGCAAAAGCATGGGTCATGGGACATGAACTGTCTCATTTATCAGATTTAGTTAGCGTGGCAAATGCTGGAGTATGTGTGGATAAGCAGCATTATGTTCCAGTCTAGAAAAGCCATATAATCAGTTCTGTTCTTTTTGTATTTTAATTTTAATTTGAATTGGTAAGTTATGTAGTTTTATCTGGGGGCAATCCTTGTGACTTTACAGACCCTAGTGTGTCAACATTTAAATATTTACAATTGTTCTGGTTACTTCTTATAAATCTGATGATTTATTGTTTTGATATTTTCTGTTGAATTCCATGTCTTGTCTACTTAAAGCATTGATATCATGGACGACAGATATCATAAGCATATGAAGTACATATGGTAGACTTGGAGCACAAGTACATCGAGAAAGGAGAATTTTGCCAACTGGTGCATTCTTCTGTAGGAGTTAGAAGCTGTAGCTTGATAGTCCTTATATATATATATGCGCTTTTGTGCATGCACCCCCCCGCCCCCCCAATTACACATTATGAATATGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00156	187092	191215	-

Gene family

Gene family	subfamily
Transcription Factors Family	DBB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005622 intracellular

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000156s00012002.1	PF00643.19	zf-B_box	15	57	6.00E-05
Glyur000156s00012002.1	PF00643.19	zf-B_box	59	101	5.80E-06
Glyur000156s00012002.1	PF06203.9	CCT	321	349	9.20E-11
Glyur000156s00012002.2	PF00643.19	zf-B_box	15	57	5.30E-05
Glyur000156s00012002.2	PF00643.19	zf-B_box	59	101	5.10E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.563
SRR1783600	control	3.567
SRR1783602	moderate drought stress	7.989
SRR1811619	moderate drought stress	7.826

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.779
DRR006520	Root Summer glycyrrhizin high producing strain	6.673
DRR006521	Root Winter glycyrrhizin high producing strain	8.859
DRR006522	Root Winter glycyrrhizin high producing strain	8.779
DRR006523	Root Summer glycyrrhizin low producing strain	9.616
DRR006524	Root Summer glycyrrhizin low producing strain	9.472
DRR006525	Leaf Summer glycyrrhizin high producing strain	24.746
DRR006526	Leaf Summer glycyrrhizin high producing strain	24.782

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.363
SRR2868004	Drought Stress (root)	5.327
SRR2967015	Control (root)	6.058

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.357
SRR9715740	Leaf	26.923
SRR9715741	Leaf	23.722
SRR9715739	Root	2.656
SRR9715742	Root	8.725
SRR9715743	Root	6.833

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.245
SRR8749028	MeJA induced 9h	3.268
SRR8749029	MeJA induced 9h	2.319
SRR8749030	Uninduced	0.146
SRR8749031	Uninduced	1.593
SRR8749032	Uninduced	1.681

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.833
SRR8400027	Control - Root	7.745