Gene detail information of Glyur000156s00012001 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15630.1 | 2.00E-29 | Uncharacterised protein family (UPF0497) |
| NR | XP_003625864.1 | 6.65E-99 | hypothetical protein MTR_7g108130 [Medicago truncatula] |
| Swissprot | tr|A7NW78|CSPL5_VITVI | 9.00E-51 | CASP-like protein 1E2 |
| trEMBL | tr|G7KQZ0|G7KQZ0_MEDTR | 2.00E-99 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00156 | 183018 | 184432 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000156s00012001.1 | PF04535.7 | DUF588 | 30 | 175 | 2.20E-36 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.065 |
| SRR1811619 | moderate drought stress | 0.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.102 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.186 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.188 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.154 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.943 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.180 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.087 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.376 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 4.244 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 2.564 |
| SRR9715743 | Root | 0.971 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.121 |
| SRR8400027 | Control - Root | 1.621 |