Gene detail information of Glyur000156s00012000 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G03180.1 | 3.00E-18 | |
| NR | XP_003521532.1 | 1.78E-83 | PREDICTED: DNA ligase 1-like [Glycine max] |
| trEMBL | tr|I1JQH0|I1JQH0_SOYBN | 7.00E-84 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G36780.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00156 | 179173 | 181593 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000156s00012000.1 | PF08524.6 | rRNA_processing | 55 | 182 | 2.80E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.427 |
| SRR1783600 | control | 16.418 |
| SRR1783602 | moderate drought stress | 13.153 |
| SRR1811619 | moderate drought stress | 12.897 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 33.568 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 32.193 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 22.481 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.040 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 34.899 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 34.843 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.269 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 34.317 |
| SRR2868004 | Drought Stress (root) | 20.401 |
| SRR2967015 | Control (root) | 21.602 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 12.275 |
| SRR9715740 | Leaf | 20.107 |
| SRR9715741 | Leaf | 13.914 |
| SRR9715739 | Root | 1.068 |
| SRR9715742 | Root | 7.969 |
| SRR9715743 | Root | 5.827 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 80.040 |
| SRR8749028 | MeJA induced 9h | 43.783 |
| SRR8749029 | MeJA induced 9h | 52.224 |
| SRR8749030 | Uninduced | 20.324 |
| SRR8749031 | Uninduced | 37.935 |
| SRR8749032 | Uninduced | 11.692 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 29.529 |
| SRR8400027 | Control - Root | 27.577 |