Gene detail

Gene detail information of Glyur000156s00011993

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G48910.1	2.00E-114	Flavin-containing monooxygenase family protein
NR	KHN28240.1	0	Flavin-containing monooxygenase YUCCA10 [Glycine soja]
COG	YP_006875037.1	4.00E-67	flavin-containing monooxygenase FMO [Emticicia oligotrophica DSM 17448]
Swissprot	tr\|Q9FVQ0\|YUC10_ARATH	6.00E-139	Probable indole-3-pyruvate monooxygenase YUCCA10
trEMBL	tr\|I1JQG5\|I1JQG5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G36720.1}

Sequence

Transcript Sequence

>Glyur000156s00011993.1
CTCAGCAGCACTCCCCATATATAAATGATTAAAGTCTTAAAACACAAACCATTTACCGTACCTTATCTGAAAATTAATCATCGGTTGTAAAAATCTGTCATCATAAAACAAATCTAAAACCCTGAGAGGAAAAAAAAAAGGCAAATAGCACAATGCATGAAGCGTCGGTGATAATAATCGGAGCAGGAACTTCGGGCATCGCCACCGCTGCATGCTTAACCAAACAATCGATCCCTTACATCATGCTTGAGAGAGAAGACTGTTTCGCTTCTCTGTGGCAGAAATACACCTACGACCGTCTTCATCTCCACCTAAGGAAGCAAGTTTGTGAGCTACCCCACTTTCCATTCCCACCTTCTTACCCTCACTATGTGCCTAGGAAGCAGTTCATAGAGTATTTGAACAACTACGTGGAGCACTTCAAGATCAACCCTTTGTACCAGAGAGCCGTGGAGCTAGCAGAACATGTTGATGATGATGGTGATGGCGAGGGATTGTGGAGGGTGAAGACTAAGAATAGGAGCTCTGGTCAGGTTGAGGAATATTCTGGAAGGTTCCTTGTGCTGGCTAGTGACGAAACGGCTGAGCCACGTGTACCTGAGGTTGATGGGTTGGAAGGGAAAGTCCTTCATTCAACTGGGTACAAAAATGGGAAAGGCTTTTAAAGATGAGCATGTTCTGGTTGTTGGATCTGGCAATTCTGGCATGGAGATTGCTTTAGACTTGGCCAATTTTGGTGCCAAACCTTCAATCATTGTTCGAAGTCCGGTTCATTTTCTTTCAAGGGATATGATGTATTATGCGGGGGTATTGCTGAAGTATCTGTCACTGGGCACGGTCGAGAAGCTGGTGGTGATGGCTAGCAGGGTTGTGTATGGGGATCTGAGTAAGTATGGGATACCTTTCCCGCGGGACCTTTCACCATGAAGATGAAGTACGGAAAGTTCCCAATAATTGATCTGGGAACTGTCAAGAAAATCAAATCTGGAGAGATACAGGTGTTGCNAGCGGAAATTGAAAGCATAAGAGGTAACGAAGTGTTGTTCCGGGATGGCAAATCGCACCCATTTGACTCCATTGTTTTCTGCACAGGCTTCAAGAGATCAACTCAAAAGTGGCTCAAGCCTAGTTTCCCAAATCACTGGAAGGGTAAAAACGGTTTGTACTGCGTTGGATTGTCAAGGAGGGGATTTTATGGAGCTAACCTCGATGCTCAAAACGTAGCAAATGATATTGCCTCGTTAATTGCTCGAGAAGAAACAAAAGTACTGCCATGTGATAAAGAGGAAGAGGCAGTGATAGTTGTTGGAGCAGGCCCTTCTGGCCTCTCTGCTGCTGCATGCTTCACAAAGCAATCCATTCCTTACATAATCCTCGAAAGGGAAGACTGTTCTGCTTCTCTTTGGAAGAAATACGCCTACGACCGTCTTCACCTTCACCTCAAAAAGCACTTTTGCGAGCTTCCTCACAAGCCATTCCCTCCCTCTTCTCCTACTTACATTCCCAAGGAGCAGTTTTTGCAGTACCTTGAAGACTATGTGTCTCACTTCAGAATAAATCCTCTGTATCGCAGGACAGTGGAAGTGGCAGAGTATGATAATGAAGGGTATGGGAAATGGAGGGTGAGGGCTAGGAATGAGGATTCTGGTGAGATTGAGGAATATGTTGGGAGGTTTTTGGTGGTGGCTACTGGGGAAAATTGTGACCCTTTTGTACCTGAAGTGGAAGGGTTGAGTGGCTTCAATGGGAAGGTGATTCATTCAACTGGGTTTAAGTCTGGGAAGGAGTTCAAAGATGAGCATGTTCTTGTTGTGGGGTGTGGGAATTCTGCCATGGAAATTGCATTGGACCTTGTCAACCACCGTGCCATAACTTCCATTCTTGTTCGAAGCCCGGTTCATTTTCTGTCAAGGGAGATAATGAATTTGGGGCTGTTTCTGATGAAGTATTTGTCGATGGGCATGGTGGACTCACTGATGGTGATGCTTAGCCGGATGGTTTACGGGGATGTCACCAAATATGGGCTTAGAAGGCCCAATGAGGGTCCATTTTGCATGAAGCTCAAGTATGGCAAGTATCCAGTTATTGACGTTGGAACCTTTGAGAAAATTAAGTCTGGAGAGTTGAAGGTGTTGCCAGCGGAAATAGAAAGCGTGAGAGGCAAGGATGTCCTCTTCAAGAATGGCGAAGTGCACCCATTTGACTCAATTGTTTTCTGCACCGGCTTCAAAAGATCAACGCACAAGTGGCTCAAGGGGGATGATTACCTTCTGAATGATGATGGTCTTCCCAAGCGGAGTTACCCTTTCCATTGGAAGGGAAAGAATGGTTTGTATTGCATTGGACTATCGAGGAGAGGTTTCTACGGAGCTGCCGCAGANGCTGAAAATATAGCAAATGATGTAAGCTCCATCATGCAAAATCCCTGAAGAAAACCAACGCGGTTTAATNTGCTATATGATGTTTTGAGAATATATAGTAACAATAACGAAACGACACATATCATGAATTGGCACTTCCATCTAAAAAAAAAATATCATGAATTGGCAGATGGTCCTAAATATTGTTGATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00156	99108	113832	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K11816	YUCCA	EC:1.14.13.168	Tryptophan metabolism	map00380
			Tryptophan metabolism	map00380

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000156s00011993.1	PF13738.1	Pyr_redox_3	126	324	2.80E-21
Glyur000156s00011993.2	PF13738.1	Pyr_redox_3	7	153	2.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.396
SRR1783600	control	0.496
SRR1783602	moderate drought stress	0.364
SRR1811619	moderate drought stress	0.303

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.630
DRR006520	Root Summer glycyrrhizin high producing strain	2.561
DRR006521	Root Winter glycyrrhizin high producing strain	0.645
DRR006522	Root Winter glycyrrhizin high producing strain	0.540
DRR006523	Root Summer glycyrrhizin low producing strain	1.336
DRR006524	Root Summer glycyrrhizin low producing strain	1.439
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.599
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.828

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.727
SRR2868004	Drought Stress (root)	2.126
SRR2967015	Control (root)	2.573

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.214
SRR9715740	Leaf	1.946
SRR9715741	Leaf	8.623
SRR9715739	Root	0.077
SRR9715742	Root	0.702
SRR9715743	Root	0.808

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.373
SRR8749028	MeJA induced 9h	0.292
SRR8749029	MeJA induced 9h	0.185
SRR8749030	Uninduced	0.032
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.154

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.169
SRR8400027	Control - Root	3.973