Gene detail

Gene detail information of Glyur000156s00011991

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G03140.1	4.00E-112	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_004494319.1	0	PREDICTED: zerumbone synthase-like [Cicer arietinum]
COG	YP_004861824.1	2.00E-60	short-chain alcohol dehydrogenase-like protein [Candidatus Chloracidobacterium thermophilum B]
Swissprot	tr\|Q94KL7\|SILD_FORIN	2.00E-80	Secoisolariciresinol dehydrogenase (Fragment)
trEMBL	tr\|A0A072UF24\|A0A072UF24_MEDTR	0	Short-chain dehydrogenase/reductase {ECO:0000313\|EMBL:KEH24360.1}

Sequence

Transcript Sequence

>Glyur000156s00011991.1
AAATTATTCTATAAATGTCAATCATGTGGCATTCATATTATATTTATAACATAGATATTATTTAGCCACATTGACCAAATTACCCTTGCAGCATTTCATATGCCACTACAACAAGCTCCGAAAATCACTTTTTTTCTCTCTTAACTCTTGTTTAGTCTGACAGGGATGCAATTCTAAAGGTAGCTAAAGCTCAGAGCCTCGAACTAAATTATCGTCCTTTTTGTGAGATCTGAGCCACTAAAATCATGTTAAGAATTGGTTTGAGAAACAGCAAAAACATTTCCCATTCAAGGCCTTTGTTTGCTGAGAGCTTCTACAGGTTATTGTCTACACAGACTGGAAGGAAGCTACAAGACAAGGTAGCACTGATCACTGGGGCAGCNAGTGGAATAGGAAAAGTTACAGCAACAAAATTCATCAACAATGGGGCCAAGGTCATTATTGCTGATATCCAACAACAACTAGGCCAAGAGACTGCAAAAGAACTAGGACCTAATGCTACCTTCATAACATGCGATGTCACAAAAGAGTCAGACATATCCAATGCTGTTGATTTTGCNATTTCTGAATACAAACAGCTTGATATCATGTATAACAATGCAGGGATATCCTGCAGAAGTCCTCCAAGCATAGTTAACCTGGATTTGGCAGTGTTTGACAAAGTCATGGACATAAATGTTCGTGGGGTTATGGCGAGCATCAAGCACGCAGCACGTGTGATGATCCCACGTGGAGCCGGGTCCATTCTCTGCACTGCAAGTGTATCTGGAGTGATGGGAGGGATGTCACAGCACACATACTCAGTATCCAAGTTTGCAGTTACAGGCATTGTTAAGTCCCTGGCTTCAGAGCTATGCAAGCATGGAATCCGAGTCAATTGCATATCGCCTCCTGCCATCCCTACACCTTTGGTCATGAGCGAAATGAGTAGCATATATCCGCATCTCGATGATCAGCGAATTGTAGACATTGTTCATAATGTTGGGGTCCTGAAGGGAGCAAATTGTGAACCCAGTGATATTGCTAATGCTGCACTTTACCTTGCATCAGATGATGCCAGGTATGTCAGCGGGCATAATTTGGTTGTGGATGGAGGTTTCACATCTTTTAAGCATCTCGGCTTTCCTGCACCAGATCAAGTGCAGTAGAAATTTGTCCAATGTATTATATCTGGAAAGAAAAAGGTAACAATGATGAAAAACAATAATGAACACCTTCCATTTTCAATTTTTAATTACTTGTTTAGTAAGAGTGAGCCAAATTCACTTTCTTCNGTACTCTTGATTACCACATTCAAGAATAAAAGGGTGGCCCAGTGCACGAGGCTCCCACCATGTGGGGGGAGGGTATAGCATTTCATTTTTCTCTGGGTCTCAAGCTCCAAAACAATCATGCATATGAAAACAAAAAGACTAAATGCATTGTTATGAATTTTAAGGAGAACTAAATTGATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00156	78679	81092	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000156s00011991.1	PF00106.20	adh_short	38	203	5.20E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.422
SRR1783600	control	19.064
SRR1783602	moderate drought stress	26.532
SRR1811619	moderate drought stress	26.761

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	45.494
DRR006520	Root Summer glycyrrhizin high producing strain	44.439
DRR006521	Root Winter glycyrrhizin high producing strain	25.613
DRR006522	Root Winter glycyrrhizin high producing strain	25.254
DRR006523	Root Summer glycyrrhizin low producing strain	40.175
DRR006524	Root Summer glycyrrhizin low producing strain	39.997
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.799
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.614

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.665
SRR2868004	Drought Stress (root)	12.878
SRR2967015	Control (root)	21.789

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.466
SRR9715740	Leaf	16.383
SRR9715741	Leaf	13.890
SRR9715739	Root	7.636
SRR9715742	Root	12.897
SRR9715743	Root	13.228

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.479
SRR8749028	MeJA induced 9h	9.858
SRR8749029	MeJA induced 9h	7.441
SRR8749030	Uninduced	6.768
SRR8749031	Uninduced	3.096
SRR8749032	Uninduced	4.277

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.820
SRR8400027	Control - Root	25.769